Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01829 ATGAATACCAGCAGCTACACCAAGCAGCTAGAAGCATATTGTGAGGAAGAGTTTGCATATGAGGAGTGTTGCCGCAACCATGCAGTGAATGTTGGAGGATCTTGCATAGATGGCTGCCATCAGTATATGAAAGCAAGAAGCAAACGGAACTCTCAGAAGAGTTTCCTTTGTGCTTGTTGTGGTTGTCACCGCAACTTTCACCGCAAGAAGAACAATGATTCTAAGCCTGTGGCCCAGACTGTAACAGAGGATAACCATGCTCTCGATATGGTTCCTGTTACAGACTTAGGGCCTCCCAACAACCCAGAGCCAGTGCAGCAGATAAGGCCACCCAGGAGAAGGAGGACCACCTTCTCGCGTGACCAGAAGATCCAAATGACAAGGTTTGCTGATATTTTGGGGTGGAAACCTCATAAGGGTAACAGGGAAGATATTCAACGTTTCTGCAATGACATGGGAATCAACCGCAAGATATTCGTCATCTGGCTCAACAACAACCGTCACCGTTCTGTTCAGAATGCCAACCTCAGAAATGATTCATCAACCAACTAG 552 0.4674 MNTSSYTKQLEAYCEEEFAYEECCRNHAVNVGGSCIDGCHQYMKARSKRNSQKSFLCACCGCHRNFHRKKNNDSKPVAQTVTEDNHALDMVPVTDLGPPNNPEPVQQIRPPRRRRTTFSRDQKIQMTRFADILGWKPHKGNREDIQRFCNDMGINRKIFVIWLNNNRHRSVQNANLRNDSSTN 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01829 183 MobiDBLite consensus disorder prediction 90 119 - -
Spst6g01829 183 SUPERFAMILY Homeodomain-like 100 169 IPR009057 -
Spst6g01829 183 Pfam ZF-HD protein dimerisation region 18 71 IPR006456 -
Spst6g01829 183 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 20 70 IPR006456 -
Spst6g01829 183 NCBIfam homeobox domain, ZF-HD class 112 167 IPR006455 -
Spst6g01829 183 Gene3D - 101 172 - -
Spst6g01829 183 ProSiteProfiles 'Homeobox' domain profile. 109 173 IPR001356 GO:0003677
Spst6g01829 183 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 168 - -
Spst6g01829 183 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 20 70 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01829 Spst-Chr6 17471003 17471554 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01829 1 177 ZF-HD Transcription Factor Family AT1G69600 30.806 6.26e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Spst6g01829 ZF-HD_dimer 5.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01829 - - vra:106775003 218.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01829 6 17471003 17471554 Spst6g01829 6 17471003 17471554 ECH