Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01828 ATGTCAAGTATCAACAACACCAACACCTATATCGACCAACCAAAAACATGTTCCGAGGAAGAGGTTAGTTATAAGGAGTGTTGTCGCAACCATGCAATAGCCATGGGAGGAGCTTGCTATGATGGGTGCAATGAGTATCTTCAAGCAAGCGGCGACAACATAAGCGCTGAAAACAGTTTCCTCTGTGCTTGTTGCGGTTGTCACCGCAACTTTCACCGCAGATACATTGTTTCAAACAGCCAACCTCAGATTGAAACAGAGGAAAATGATGGTCGGAACGAAGTTCCAGTTTCAGAGCCATGTCAGTTTGCTGATATTGTGGGGGTGGAAATCGACATCCAACGTTTCTGCACTGACATGGGATTCAGTCTCAGGATGTTCGTGGTGTTCATGGTTGGATAG 402 0.4577 MSSINNTNTYIDQPKTCSEEEVSYKECCRNHAIAMGGACYDGCNEYLQASGDNISAENSFLCACCGCHRNFHRRYIVSNSQPQIETEENDGRNEVPVSEPCQFADIVGVEIDIQRFCTDMGFSLRMFVVFMVG 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01828 133 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 24 75 IPR006456 -
Spst6g01828 133 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 14 131 - -
Spst6g01828 133 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 24 74 IPR006456 -
Spst6g01828 133 Pfam ZF-HD protein dimerisation region 22 75 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01828 Spst-Chr6 17466380 17466880 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01828 3 74 ZF-HD Transcription Factor Family AT5G60480 42.466 2.73e-15 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Spst6g01828 ZF-HD_dimer 1.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01828 - - vra:106775003 124.405