Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst6g01828 | ATGTCAAGTATCAACAACACCAACACCTATATCGACCAACCAAAAACATGTTCCGAGGAAGAGGTTAGTTATAAGGAGTGTTGTCGCAACCATGCAATAGCCATGGGAGGAGCTTGCTATGATGGGTGCAATGAGTATCTTCAAGCAAGCGGCGACAACATAAGCGCTGAAAACAGTTTCCTCTGTGCTTGTTGCGGTTGTCACCGCAACTTTCACCGCAGATACATTGTTTCAAACAGCCAACCTCAGATTGAAACAGAGGAAAATGATGGTCGGAACGAAGTTCCAGTTTCAGAGCCATGTCAGTTTGCTGATATTGTGGGGGTGGAAATCGACATCCAACGTTTCTGCACTGACATGGGATTCAGTCTCAGGATGTTCGTGGTGTTCATGGTTGGATAG | 402 | 0.4577 | MSSINNTNTYIDQPKTCSEEEVSYKECCRNHAIAMGGACYDGCNEYLQASGDNISAENSFLCACCGCHRNFHRRYIVSNSQPQIETEENDGRNEVPVSEPCQFADIVGVEIDIQRFCTDMGFSLRMFVVFMVG | 133 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst6g01828 | 133 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 24 | 75 | IPR006456 | - | |
Spst6g01828 | 133 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 14 | 131 | - | - | |
Spst6g01828 | 133 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 24 | 74 | IPR006456 | - | |
Spst6g01828 | 133 | Pfam | ZF-HD protein dimerisation region | 22 | 75 | IPR006456 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst6g01828 | Spst-Chr6 | 17466380 | 17466880 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst6g01828 | 3 | 74 | ZF-HD Transcription Factor Family | AT5G60480 | 42.466 | 2.73e-15 | 67.8 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | zf-HD | Spst6g01828 | ZF-HD_dimer | 1.5e-19 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst6g01828 | - | - | vra:106775003 | 124.405 |