Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01827 ATGCCTGTTGGAATTGTGATGCCAAGTGTCCATCTGCATTATCCAAGACTCAGCAGCAATGGCTACGATTCGTTGGATCCTTTTGGCAACATCATCATCACATGGGATTTTTTGTCCGACAACGGGGATTCAGTCGATGTGAGGGTTTCAATGTACAACTTCCAACTATTTCGTCATGTGGAGGAGCCTGGTTGGAATTTGGGTTGGGCATGGAAAGGTGATGAGGTGATTTGGGCAATGTTGGGAGCAGAGGCAAAGGAGCAAGGTAACTGCACAAGATTTAAAGGACAACAGAAACCACATTGTTGTGAGAGGCAGCCAGTTATCATTGATCTCATGCCTGGAACCCCCTACAACATGCAGACTGCAAATTGCTGTAAAGGTGGGGTCCTAACATCCGTAAAACAAGATGATACCAAACGTGGTGCCACCTTCCAGTTCAATTATATCAAACCATCACACTCTGATTCAGGTGACAATTTTAACATGCCCGAAAATTTCACCCTTGGAATTCCTGGCTATAGCTGTGGGACACCATTTCAGGTCCAACCAACCAAGTTTACCAAAGATGGACACAGATGGCAACAAGTCTTGGGTGAGTAG 603 0.4544 MPVGIVMPSVHLHYPRLSSNGYDSLDPFGNIIITWDFLSDNGDSVDVRVSMYNFQLFRHVEEPGWNLGWAWKGDEVIWAMLGAEAKEQGNCTRFKGQQKPHCCERQPVIIDLMPGTPYNMQTANCCKGGVLTSVKQDDTKRGATFQFNYIKPSHSDSGDNFNMPENFTLGIPGYSCGTPFQVQPTKFTKDGHRWQQVLGE 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01827 200 Pfam COBRA-like protein 47 193 IPR006918 GO:0010215|GO:0016020
Spst6g01827 200 PANTHER PROTEIN COBRA 19 197 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01827 Spst-Chr6 17456298 17458014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01827 19 199 COBRA Gene Family AT1G09790 49.727 6.84e-58 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01827 - - lang:109329241 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01827 6 17456298 17458014 Spst6g01827 6 17456298 17458014 ECH