Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01824 ATGGCTATACATACAAAATTCCGTCTTATTACTTACTCACCAGAGATTGTAGATGGACAGCCTATTTTTGTCTCTTCAAACTGTCTTCCTACCAAGGCTTCGAAATATGAACCTGCAGGTCATGCTTTCCATTCTGCCGCACGGAAACTTCTTGGTGTTCAGGAAGATAAGAATGAGGCTGATGATAAAAAGGTTGTTGATGATAAGGAACAAGCGTACCTCCCATCCGATTCTTATAGCAGCAAGAGCAAAAAGAAATCTGGTACTGGAGATAAGCAACAAGATCACTATGCATTATTGGGTCTGAGTCATCTAAGGTATCTGGCTACGGACGAAGAAATCCGGAAAAGCTATCGAGAAACTGCCTTGAGGTGTCATCCTGATAAACAGGCTGCTCTCCTTCTTGGGGAGGAAACCGAGGCTGTGAAACAAGCAAAAATGGATGAAATAGAAAGTCACTTCAAGGCAATCCAGGTAGCATATGAAGTGTTGCTCGATCCTGTGAAGAGAAGGATTTATGATTCCACAGATGAGTTTGATGACGAGATCCCCACGGATTGTGCTCCACAGGATTTCTTTAAGGTGTTTGGTCCTGCTTTTGTGCGGAATGGGCGGTGGTCAGTTACTCAACCAATTCCAACACTAGGTGACGATAACACTCCATTAAAACAAGTTGATAATTTCTACAATTTTTGGTACTCCTTTAAAAGTTGGAGGGAGTTTCCTCATGCTGATGAGTTTGACCTTGAGCAAGCTGAATCCCGAGATCACAAGAGGTGGATGGAAAGGCAAAATGCGAAAATGACAGAAAAAGCTAAGAAGGAAGACTATGCACGGATTCGCACTCTTGTTGATAATGCTTATAAGAGGGACCCCAGGATACTGAGAAGAAAGGAAGAAGAAAAGGCTGAGAAACAAAGGAAAAAAGAGGCTAAGGTCCTGGCAAAGAAATTGCAGGAAGAAGAAGCAGCCAGAATTGCAGAGGAGGAGAAGCAACGAAAAGAGGAAGAAGAGAGACGAGCTGCAGAAGCTGCTTTACAACAGAAGAAGGTGAAAGAGAAAGAGAAGAAGCTGTTGCGGAAGGAGCGAGCTCGTCTTAGAACAATTTCAGGACCTATTCTATCTCAACATTTGCTTGATATTTCTGATGATGATGTAGAAAGGCTTTGCATGTCACTTGATATTGAGCAGATGAGGAGTCTCTGTGAGAACATGGAAGGCAAACAGGTGTTATTAGAGCAAGCAAATGTTTTGAGAGATGCGCTGAGTACGAAGAAAGAGGTGGCTGATGAGAAAACGAATCAACAAAATGGCAATGGTTCCATCAAGGCTAATGGGAGTGCTTCCCGAAGCAATGTTGAGAAGAAGGATAAACCTTGGAATAAAGAAGAGATTGATCTACTGAGAAAAGGAATGCAGAAATATCCCAAAGGAACATCACGGAGATGGGAGGTTATTTCAGAATACATTGGTACTGGAAGATCTGTAGAAGAAATAATGAAGGCAACTAAAACTGTACTTCTCCAGAAACCTGATTCATCAAAAGCTTTTGACACATTTCTTGAAAAAAGGAAACCTGGCGCACAATCAATCGAGTCTCCACTGACAACCAGAGAAGAATTAGAAGGGGTACCAACTCCTGTCTCCTCAACAAATAACACAGAAGACTCTCATAGCAAAAGCACAGATAGTCAGAACTCTGCATCTGCTAATGGAGTTTCTTCCAGTTCAGAACAGGATGTGTGGTCTGCAGTGCAGGAACGAGCACTGGTTCAAGCTTTAAAAGCCTTTCCAAAGGAAACAAGCCAGAGATGGGAGCGAGTTGCGGCAGCTGTACCTGGGAAGACTGTGAATCAGTGTAAGAAAAAATTTGCGTTGATGAAGGAGAGTTTCAGGAACAAGAAAAGTGCAGTCTAA 1917 0.4257 MAIHTKFRLITYSPEIVDGQPIFVSSNCLPTKASKYEPAGHAFHSAARKLLGVQEDKNEADDKKVVDDKEQAYLPSDSYSSKSKKKSGTGDKQQDHYALLGLSHLRYLATDEEIRKSYRETALRCHPDKQAALLLGEETEAVKQAKMDEIESHFKAIQVAYEVLLDPVKRRIYDSTDEFDDEIPTDCAPQDFFKVFGPAFVRNGRWSVTQPIPTLGDDNTPLKQVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKMTEKAKKEDYARIRTLVDNAYKRDPRILRRKEEEKAEKQRKKEAKVLAKKLQEEEAARIAEEEKQRKEEEERRAAEAALQQKKVKEKEKKLLRKERARLRTISGPILSQHLLDISDDDVERLCMSLDIEQMRSLCENMEGKQVLLEQANVLRDALSTKKEVADEKTNQQNGNGSIKANGSASRSNVEKKDKPWNKEEIDLLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEIMKATKTVLLQKPDSSKAFDTFLEKRKPGAQSIESPLTTREELEGVPTPVSSTNNTEDSHSKSTDSQNSASANGVSSSSEQDVWSAVQERALVQALKAFPKETSQRWERVAAAVPGKTVNQCKKKFALMKESFRNKKSAV 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01824 638 ProSiteProfiles dnaJ domain profile. 95 177 IPR001623 -
Spst6g01824 638 Coils Coil 295 364 - -
Spst6g01824 638 CDD SANT 459 501 IPR001005 -
Spst6g01824 638 SUPERFAMILY Homeodomain-like 580 635 IPR009057 -
Spst6g01824 638 CDD SANT 582 628 IPR001005 -
Spst6g01824 638 FunFam Myb family transcription factor 576 636 - -
Spst6g01824 638 Gene3D DnaJ domain 78 187 IPR036869 -
Spst6g01824 638 PRINTS DnaJ domain signature 118 133 IPR001623 -
Spst6g01824 638 PRINTS DnaJ domain signature 149 169 IPR001623 -
Spst6g01824 638 PRINTS DnaJ domain signature 48 66 IPR001623 -
Spst6g01824 638 Gene3D - 572 638 - -
Spst6g01824 638 ProSiteProfiles SANT domain profile. 577 632 IPR017884 -
Spst6g01824 638 Pfam DnaJ domain 95 174 IPR001623 -
Spst6g01824 638 CDD DnaJ 95 166 IPR001623 -
Spst6g01824 638 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 9 637 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Spst6g01824 638 Gene3D - 452 510 - -
Spst6g01824 638 ProSiteProfiles Myb-like domain profile. 574 624 IPR001005 -
Spst6g01824 638 MobiDBLite consensus disorder prediction 543 581 - -
Spst6g01824 638 MobiDBLite consensus disorder prediction 252 272 - -
Spst6g01824 638 Pfam Myb-like DNA-binding domain 581 624 IPR001005 -
Spst6g01824 638 MobiDBLite consensus disorder prediction 520 581 - -
Spst6g01824 638 MobiDBLite consensus disorder prediction 433 449 - -
Spst6g01824 638 MobiDBLite consensus disorder prediction 427 464 - -
Spst6g01824 638 ProSiteProfiles Myb-like domain profile. 452 507 IPR001005 -
Spst6g01824 638 SUPERFAMILY Chaperone J-domain 78 173 IPR036869 -
Spst6g01824 638 ProSitePatterns Nt-dnaJ domain signature. 154 173 IPR018253 -
Spst6g01824 638 SMART dnaj_3 94 169 IPR001623 -
Spst6g01824 638 SMART sant 578 630 IPR001005 -
Spst6g01824 638 SMART sant 456 509 IPR001005 -
Spst6g01824 638 MobiDBLite consensus disorder prediction 450 464 - -
Spst6g01824 638 SUPERFAMILY Homeodomain-like 453 501 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01824 Spst-Chr6 17449924 17451840 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01824 96 295 C2H2 Transcription Factor Family AT1G74250 30.126 2.18e-19 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst6g01824 DnaJ 6e-17 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01824 K09522 - gmx:100814414 1009.98