Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01801 ATGGATGATGGAGAGAGTAATGAAGCACCAAATTCAAAGGTTCATGACTTCGACTTGAACATTCCATATGTGGAAGACTTTGATGTCAACCCTGAAAACGAGACTTCATCTCCAAATACCAAGCAACTAAAGTATGGTTGTGAGCAGAAGATGAAAGTAGAGGATGCAATTGCTGAAGTTCAGCATGCTGCTAAAGTGGAAACTGCTGAAGGAGCTATCTCTGAAGTTGAAACTCAGCATATTGCCTCAGTCTCCTTGGCAACACCAAGTGCCTCACAAGGTCGCTGCCGCCGGCGCTATCGCCGCCGTCATCATCATGGTGGAGAAGCTAAGCAGAGCAGTGATCCAGCTAGATTCTGCACAAATTTTATCTGTAGGACAAGAAAAACTCCCATGTGGCGCAAGGGACCTCTTGGACCAAAGACTCTCTGCAATGCTTGTGGCCTTCAATACATTAAGACTGTGAAGAGTAGAGGCAGTGACCTACCCGCTACAGTTCCTGTTGAAGGTGATGCTTCCACTGTTCATGATGATGATGATGATGGTGGTGGTGCTTCTCATGGTCCTGTCCCTGTCCCACCTGAAACTGTTGAAGTAGAAAATCTCTAA 609 0.4614 MDDGESNEAPNSKVHDFDLNIPYVEDFDVNPENETSSPNTKQLKYGCEQKMKVEDAIAEVQHAAKVETAEGAISEVETQHIASVSLATPSASQGRCRRRYRRRHHHGGEAKQSSDPARFCTNFICRTRKTPMWRKGPLGPKTLCNACGLQYIKTVKSRGSDLPATVPVEGDASTVHDDDDDGGGASHGPVPVPPETVEVENL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01801 202 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 111 164 - -
Spst6g01801 202 SMART GATA_3 114 171 IPR000679 GO:0006355|GO:0043565
Spst6g01801 202 MobiDBLite consensus disorder prediction 1 42 - -
Spst6g01801 202 CDD ZnF_GATA 119 170 IPR000679 GO:0006355|GO:0043565
Spst6g01801 202 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 32 151 - -
Spst6g01801 202 ProSiteProfiles GATA-type zinc finger domain profile. 125 151 IPR000679 GO:0006355|GO:0043565
Spst6g01801 202 Pfam GATA zinc finger 125 153 IPR000679 GO:0006355|GO:0043565
Spst6g01801 202 Gene3D - 114 165 IPR013088 GO:0006355|GO:0008270
Spst6g01801 202 MobiDBLite consensus disorder prediction 158 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01801 Spst-Chr6 17152014 17152895 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01801 120 153 C2C2-Gata Transcription Factor Family AT3G20750 64.706 9.97e-12 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Spst6g01801 GATA 5e-13 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01801 - - gmx:102663335 187.963