Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01795 ATGGGTAGAAGAATCGGAGGAGGTAGGTCTCTTCAACAAACCCTCCGCCGCCGTATTGAAGCCTGCAAGACCATATACCCCACCGCCGAAAAAATCGCCCACCATCTCCGTCTAACTTATTCCGATTATCGCCGAACTAAACACCAAACCCTTGTTCGATTTGTTCAGGAAGCGCTTCATTCCACCACCAAGCTTAATCACACTCCCACGCCCAATCGTACCCATGACGACGATGGAGAATCTCAAAGCACGTCTCGAAAGCGTAGGAAGAAAATCGATGAGGGTGGAGAGAGATTGCAAACGATGGAAGCGTTGTTACACGTGGGAGGGAGGGTGCAGATCCCTTCCTCATCGTCCTCTGTTCTGGAGAGTGACGATGAGGAAACTTTGTCAATGTCGGAGGACGCAATTTACGGGGATAAGGTGGAGCCTGGGTTTGATTTGATGAAGACAATGCTAAGGATGTCGTATACACCGAAGAAAGTGTTGGGGGAGGAAAAAAATGTTGAATTGGAGGTGGGAAATAGCAGTAAGGGAACTGCTGCTAGTGCTCCTGTGAATGAAGAGACCGGGAATAGTAGTAAAGTGACTTTTGTGAATGAGGAGAGGAATTCGGTTTTGAATGATGAGGTGAAGAGGAATGATGGACCGAGGTTTAAAGATTTGGGTGGGATGAAAGAGGTTTTGAAGAAACTGAGGAGGATGATATTGCCTTTGTTTCTCCCTCATACACTGTTACAGGTGAAGGTAATGAATGGAGGCATTTTGTTGCATGGACCATCTGGATGCGGGAAGACCACACTTGCTAATGCAATAGCAAATGTCACCGGTTTACCTTTCTATCAGATTTCAGCTACGGAGGTGGTTTCTGGAGTTTCAGGTGCATCTGAAGAATATATAAGAGAACTTTTTGTTAAAGCGCAAAGAACTGCACCTTCAATCATCTTCATTGACGAGATTGATGTAATCTCTTCCAAAAGAGATAATTTGCAGAGTGGCATGGAGAGACGTATTGTGTCACAATTAATGACTTGCATGGATCAATTAAATAATCCAGCGGATTCAGAGAATAGTCACGGCTACGTTCTGGTAATTGGAGCAACAAATAGGCTTGATGCTGTTGACCCTAACTTGAGAAGGCCTGGTCGGTTTAAAGATGAAATTATGATTACCAATCCTGATGAATCTGCCAGGAAGGAGATACTGTCTCTTCTTACTTCCCATATTAGATTTGATGGTTCATTTGATATACAGAAGATAGCCAGGGTTACCTCAGGATTTGTTGGTGCTGATTTGAGAGCTCTGGTTGAGGGGGCTTATATTCTGGCAATAGAGAGAAATTTTGATGAAAAGATATCTGAATTGTCTCAAAATCTCAATGAGGACGCTGAATACGGGTGGAGGACTGAAGACTGGTCGGCTGAAGGAGTAGATATTGTTATCAAAATGTCTGATTTTGAGGAGACCATCAAAATGATGCAACCTTCATTAAAAAGAAAAGGATTCTCTACCCTTCCTGATGTAAAATGGGAAGACGTTGGGGGTTTTGAGCTTTTAAGAAAGGAGTTTGAACTATACATTACAAGACGTATAAAATATCCTGAATCTTATGAGACTCTAGGGGTTGCTATTGAGACAGGTTTTTTGCTTTATGGACCTCCTGGTTGTGGTAAAACACTGATAGCTAAAGCTGTTGCTAACGAAGCAGGCGCTAGTTTTATCTATATTAAGGGTGCCGAACTCTTAAATAAATATGTTGGAGAAAGTGAGCTTGCAGTTCGATCATTATTTGACCGCGCAAGGACATGTGCGCCATGTATAATCTTTTTCGATGAGTTTGATGCTTTGGCAACAAAACGTGGTACGGAAGGTAGTTGGGTTACTGAACGACTATTGAACCAGTTACTTCTTGAGTTGGATGGCGCAGAGCAGAGGCGAGGTGTTTTTGTGATCGGTGCTACAAATAGGCCTGATGTAATAGACCATGCTGTCCTACGACCTGGTAGATTTGGTAAACTTGTTTACGTTCCACTACCAAGTCCAGACCAACGAGTTTTGATATTGAAAGCAATTGCAAGGAAGATGAATATTGATGCCAGTGTTGATTTAAGTGCCATAGCAAGATCGGAAGCTTGTGAAAATATGAGTGGTGCTGATCTTGCTGCATTGATGAATGAAGCATCAATAGCTGCTCTTGAAGATACAACTCAGGATGAATTTAATAAAATCATCAAGAGTAAACATTTTGAGATAGCATTGAGTAAAGTGTCGCGATCTGTGTCGGACAAGCAAAAACAATACTACGAGCAATTGTCAGAGAACTTGAAAGCATGCGCTAAAATGAGGTAA 2349 0.4244 MGRRIGGGRSLQQTLRRRIEACKTIYPTAEKIAHHLRLTYSDYRRTKHQTLVRFVQEALHSTTKLNHTPTPNRTHDDDGESQSTSRKRRKKIDEGGERLQTMEALLHVGGRVQIPSSSSSVLESDDEETLSMSEDAIYGDKVEPGFDLMKTMLRMSYTPKKVLGEEKNVELEVGNSSKGTAASAPVNEETGNSSKVTFVNEERNSVLNDEVKRNDGPRFKDLGGMKEVLKKLRRMILPLFLPHTLLQVKVMNGGILLHGPSGCGKTTLANAIANVTGLPFYQISATEVVSGVSGASEEYIRELFVKAQRTAPSIIFIDEIDVISSKRDNLQSGMERRIVSQLMTCMDQLNNPADSENSHGYVLVIGATNRLDAVDPNLRRPGRFKDEIMITNPDESARKEILSLLTSHIRFDGSFDIQKIARVTSGFVGADLRALVEGAYILAIERNFDEKISELSQNLNEDAEYGWRTEDWSAEGVDIVIKMSDFEETIKMMQPSLKRKGFSTLPDVKWEDVGGFELLRKEFELYITRRIKYPESYETLGVAIETGFLLYGPPGCGKTLIAKAVANEAGASFIYIKGAELLNKYVGESELAVRSLFDRARTCAPCIIFFDEFDALATKRGTEGSWVTERLLNQLLLELDGAEQRRGVFVIGATNRPDVIDHAVLRPGRFGKLVYVPLPSPDQRVLILKAIARKMNIDASVDLSAIARSEACENMSGADLAALMNEASIAALEDTTQDEFNKIIKSKHFEIALSKVSRSVSDKQKQYYEQLSENLKACAKMR 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01795 782 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 501 IPR027417 -
Spst6g01795 782 Gene3D - 393 500 - -
Spst6g01795 782 MobiDBLite consensus disorder prediction 70 97 - -
Spst6g01795 782 PANTHER AAA-FAMILY ATPASE 138 776 - -
Spst6g01795 782 Gene3D - 679 754 - -
Spst6g01795 782 Gene3D - 198 391 IPR027417 -
Spst6g01795 782 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 774 IPR027417 -
Spst6g01795 782 Pfam AAA+ lid domain 415 453 IPR041569 -
Spst6g01795 782 Pfam AAA+ lid domain 700 750 IPR041569 -
Spst6g01795 782 Gene3D - 506 769 IPR027417 -
Spst6g01795 782 SMART AAA_5 544 680 IPR003593 GO:0016887
Spst6g01795 782 SMART AAA_5 251 394 IPR003593 GO:0016887
Spst6g01795 782 MobiDBLite consensus disorder prediction 173 193 - -
Spst6g01795 782 ProSitePatterns AAA-protein family signature. 648 666 IPR003960 GO:0005524|GO:0016887
Spst6g01795 782 FunFam Ribosome biogenesis ATPase RIX7 208 391 - -
Spst6g01795 782 FunFam ATPase, AAA family protein 506 698 - -
Spst6g01795 782 MobiDBLite consensus disorder prediction 62 97 - -
Spst6g01795 782 Pfam ATPase family associated with various cellular activities (AAA) 549 677 IPR003959 GO:0005524|GO:0016887
Spst6g01795 782 Pfam ATPase family associated with various cellular activities (AAA) 255 390 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01795 Spst-Chr6 17114702 17118263 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01795 254 776 Calmodulin-binding Proteins AT3G56690 35.678 7.33e-101 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01795 K14571 - gmx:100809594 1011.52