Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01779 ATGTCTCTAACAGGCCGTTCTCGTATTGTGGTGAATGGGGTTAGAAGAACGAGAACTTCTCACTATTTCTGGTGCCTATATTGCCAAAGAACCGTGAGGATTCCCTTTGCAAACAATAATGGTTCTACATGCCCCTATTGTTTCCACCAACTTCGTTATGAGCTTGATATCTCAAGGCCTAGGCTTCTCATGAACGTGCCAAATAACTTGGAACCTTCACCAGCTCCTCAACTTCTGCATAACTTGGCCCTAATTCTTGATCCACCTCTAAGGAGGCAAAACAACAACCATTTGGACACAACCACACAATGGGAAACAGAAAATGAAGATGGTTTAGATCCTCAGGCTTGGATTACACTCCGATTTCCAAGGCCAAGTCGTGCACCTAGGCCTATTTCCCCACCACAAAACTTGGCTCCTCCCAATGACACTGACACCCTTTTTCAGAACACACTAATAGATGACTTCATTGATGGCATGATTCAAAATAGACCAGGGCCACCTCCAGCAACATCTTCTGCCATTGCAGCATTGCCAATGGTGAAGCTGACACAAGCCCATTTGGCTAGTGACCCCAATTGTCCAATTTGCAAAGACGAATTTGAGCTTGACATGGAAGCCAGAGAGTTGCCATGCAAGCATTTCTACCATTCTGACTGCATCACCCCTTGGCTGCGCATGCACAACACTTGCCCTGTGTGTCGCTATGAGCTACAAGCTGTAGCTACAACTAATTATAATTACCGTTTCCAAAACGATGAGAACGATCTGAGGTTTGCGTTTGAGGATATCACAAGCAGCTTGTACTGGATCTGGAATCACTTGGCTTCCTTCAGGCCTATCCGTTCAGTCCTAGATTGGACACGGTCTTACTTTGATTTCCAAGGTAGTCCTTGGTGGCGATCATTGTTCGTTATATAG 921 0.4539 MSLTGRSRIVVNGVRRTRTSHYFWCLYCQRTVRIPFANNNGSTCPYCFHQLRYELDISRPRLLMNVPNNLEPSPAPQLLHNLALILDPPLRRQNNNHLDTTTQWETENEDGLDPQAWITLRFPRPSRAPRPISPPQNLAPPNDTDTLFQNTLIDDFIDGMIQNRPGPPPATSSAIAALPMVKLTQAHLASDPNCPICKDEFELDMEARELPCKHFYHSDCITPWLRMHNTCPVCRYELQAVATTNYNYRFQNDENDLRFAFEDITSSLYWIWNHLASFRPIRSVLDWTRSYFDFQGSPWWRSLFVI 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01779 306 SMART ring_2 194 234 IPR001841 -
Spst6g01779 306 ProSiteProfiles Zinc finger RING-type profile. 194 235 IPR001841 -
Spst6g01779 306 FunFam E3 ubiquitin-protein ligase RING1-like 158 241 - -
Spst6g01779 306 CDD RING-H2_RNF126-like 193 235 - -
Spst6g01779 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 107 238 - -
Spst6g01779 306 SUPERFAMILY RING/U-box 174 241 - -
Spst6g01779 306 Pfam Ring finger domain 193 235 IPR001841 -
Spst6g01779 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 241 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01779 Spst-Chr6 16983083 16984356 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01779 1 295 C3H Transcription Factor Family AT1G68180 31.788 4.56e-41 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01779 K11982 - gmx:100793656 452.595