Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01746 ATGTCATTCCGTAGCATAGTTCGTGATGTAAGGGATAGTTTCGGGAGCTTGTCTAGGCGTAGTTTTGATGTCAGACTTACGGGTCATCATAGAGGAAAATCTCAAGGATCGGTGCAGGATTTGCATGACCAACCTCTGGTGATTCAAAATAGCCGCTGGGCGAGCTTACCCCCAGAATTACTGTTTGATATCATTAGAAGGCTAGAGGAGAGTGAGAATACATGGCCGTCTCGAAAGCACGTTGTTGCATGTGCTGCAGTTTGCCAGTCTTGGAGGAACATGTGCAAGGAAATTGTTAAGAGCCCAGAGTTCTGTGGCAAACTTACATTCCCCGTGTCCTTGAAGCAGCCTGGACCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTAATCTAACATACCACCTATTCCTTTGTCTCAGCCCTGCTTTGTTGGTTGAAAATGGAAAATTCCTCCTTTCTGCTAAGAGGACAAGGAGAACAACTTACACTGAGTATGTTATTTCCATGGATGCCGACAACATCTCTAGATCAAGTAACACTTACATCGGAAAGCTGAGATCAAATTTTCTTGGTACAAAATTCATTATATATGATACACAGCCTCCATACTCTTCTGCCCATATATGCCCTCCTGGGACTGGGAAGACGAGCCGCAGATTTTATTCGAAAAAGGTCTCGCCTAAGGTCCCATCTGGAAGTTACAACATAGCTCAGGTAACATATGAATTAAATGTGCTTGGGACTCGAGGCCCACGAAAGATGCACTGCGTCATGCATTCGATACCAGCATCAGCATTGGATGCCGGTGGCACGGTTCCCGGCCAGCCAGAGCTTCTTCCCCGTTCTCTGGAGGACTCTTTTCGGAGCATCTCATTTTCTAAGTCTCTAGATCGCTCTATCGAGTTCAGTAGTTCACGGTTTTCTGAAATTGGAGAATCCTGTATGGAGGACGATGATGGCAAACTGAGACCCTTGGTTCTGAAAAACAAGCCTCCAAGATGGCATGAGCAGTTACAATGTTGGTGCCTTAATTTTCGTGGCCGAGTAACCGTTGCATCTGTTAAAAACTTTCAGTTGATCGCTGCCACCCAACCAGCTGCCGGTGCACCTACACCATCTCAACCGGCTCCACCAGAACATGATAAGATCATTCTTCAGTTTGGAAAAGTTGGGAAGGACATGTTCACCATGGATTATCGGTACCCTTTATCTGCATTCCAAGCTTTTGCAATATGCTTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAA 1284 0.4517 MSFRSIVRDVRDSFGSLSRRSFDVRLTGHHRGKSQGSVQDLHDQPLVIQNSRWASLPPELLFDIIRRLEESENTWPSRKHVVACAAVCQSWRNMCKEIVKSPEFCGKLTFPVSLKQPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYSSAHICPPGTGKTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCVMHSIPASALDAGGTVPGQPELLPRSLEDSFRSISFSKSLDRSIEFSSSRFSEIGESCMEDDDGKLRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01746 427 Gene3D - 48 101 - -
Spst6g01746 427 PANTHER TUBBY-RELATED 29 425 - -
Spst6g01746 427 ProSitePatterns Tub family signature 1. 349 362 IPR018066 -
Spst6g01746 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
Spst6g01746 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Spst6g01746 427 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Spst6g01746 427 PRINTS Tubby superfamily signature 331 348 IPR000007 -
Spst6g01746 427 PRINTS Tubby superfamily signature 349 365 IPR000007 -
Spst6g01746 427 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Spst6g01746 427 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Spst6g01746 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Spst6g01746 427 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515
Spst6g01746 427 CDD F-box_AtTLP-like 53 97 - -
Spst6g01746 427 Pfam Tub family 114 422 IPR000007 -
Spst6g01746 427 FunFam Tubby-like F-box protein 110 427 - -
Spst6g01746 427 Pfam F-box domain 53 100 IPR001810 GO:0005515
Spst6g01746 427 FunFam Tubby-like F-box protein 48 101 - -
Spst6g01746 427 Gene3D Tubby Protein; Chain A 112 421 IPR025659 -
Spst6g01746 427 SUPERFAMILY Tubby C-terminal domain-like 102 427 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01746 Spst-Chr6 16741155 16743823 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01746 1 427 TUB Transcription Factor Family AT1G76900 70.259 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Spst6g01746 Tub 1e-117 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01746 K19600 - gmx:100814578 828.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01746 6 16741155 16743823 Spst6g01746 6 16741155 16743823 ECH