Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01741 ATGGCGTTTGAACTTTGTAGGTTCTGCTTGCTGTACACTTCCCCTGCTGGTGTTGCTACAGCTTCTGCCGTTGCTCCACCACCGAACCACTTCCCTGCAAACCAAACTTCAGTAGCGCAAGGTGCGTATCGATCACCGTTTCCTCGATGGATTGCTTCAGACCTCCTTCCCAACAACCATGCTCAGGAAAAATGGCTTGTCATTTTGATGGCTGATGCCGAGGACATTCAACCACTTGTTGTTGATAATGGAACTGGAATGGTCAAGGCTGGTTTTGCGGGTGATGATGCCCCCAGGGCTGTGTTCCCCAGTATTATTGGGCGACCGCGCCACACTGGTGTAATGGTTGGGATGGGTCAGAAGGATGCTTACGTGGGTGATGAAGCCCAATCAAAAAGGGGTATACTCACATTGAAGTATCCTATAGAGCATGGCATAGTCAGCAACTGGGATGATATGGAGAAGATTTGGCATCACACATTTTACAACGAGCTACGTGTTGCCCCTGAAGAGCACCCTGTACTTCTTACTGAGGCACCACTCAATCCCAAGGCCAATAGAGAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTCCCTGCCATGTATGTGGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGGAATTGTGCTTGATTCTGGTGATGGTGTGAGTCACACGGTGCCCATATATGAAGGGTATGCCCTTCCACATGCGATTCTGCGGTTGGACCTTGCTGGTCGTGATTTAACGGAGTACTTGGTGAAAATTCTTACTGAGAGAGGATACTCCTTCAGCACCTCTGCTGAAAAGGAAATTGTCCGTGATGTGAAGGAGAAATTGGCATACGTGGCCCTTGATTTTGAACAAGAAATGGAGACTACCAAGAGTAGTTCTGCAGTGGAGAAGAGCTATGAGTTGCCTGATGGACAGGTTATTACAATAGGGTCTGAGAGATTCCGTTGCCCAGAAGTACTGTTCCAACCTTCTCTAATTGGTATGGAAGCTACTGGAATTCATGAAACGACGTACAACTCCATCATGAAATGTGATGTTGATATTAGGAAGGATCTGTATGGAAACATTGTGCTTAGTGGAGGGTCTACAATGTTTCCTGGAATTGCTGATCGTATGAGCAAGGAAATCGGTGCTCTAGCACCAAGCAGCATGAAAATTAAGGTGGTTGCACCTCCTGAGAGAAAGTACAGTGTCTGGATTGGTGGTTCTATCTTAGCATCACTTAGCACCTTCCAACAGATGTGGATCTCTAAGGGTGAATATGATGAATCTGGGCCAGCTATCGTTCATCGGAAGTGCTTCTAA 1341 0.4668 MAFELCRFCLLYTSPAGVATASAVAPPPNHFPANQTSVAQGAYRSPFPRWIASDLLPNNHAQEKWLVILMADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEYLVKILTERGYSFSTSAEKEIVRDVKEKLAYVALDFEQEMETTKSSSAVEKSYELPDGQVITIGSERFRCPEVLFQPSLIGMEATGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIGALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01741 446 ProSitePatterns Actins signature 1. 124 134 IPR004001 -
Spst6g01741 446 Gene3D - 209 409 - -
Spst6g01741 446 SMART actin_3 76 446 IPR004000 -
Spst6g01741 446 FunFam Actin, alpha skeletal muscle 400 446 - -
Spst6g01741 446 Pfam Actin 74 446 IPR004000 -
Spst6g01741 446 ProSitePatterns Actins signature 2. 427 435 IPR004001 -
Spst6g01741 446 Gene3D - 79 440 - -
Spst6g01741 446 CDD NBD_sugar-kinase_HSP70_actin 79 252 - -
Spst6g01741 446 FunFam Actin, alpha skeletal muscle 105 142 - -
Spst6g01741 446 Gene3D Actin; Chain A, domain 4 251 342 - -
Spst6g01741 446 FunFam Actin, alpha skeletal muscle 324 399 - -
Spst6g01741 446 ProSitePatterns Actins and actin-related proteins signature. 175 187 IPR020902 -
Spst6g01741 446 SUPERFAMILY Actin-like ATPase domain 75 224 IPR043129 -
Spst6g01741 446 FunFam Actin, alpha skeletal muscle 72 230 - -
Spst6g01741 446 FunFam Actin, muscle 251 342 - -
Spst6g01741 446 PRINTS Actin signature 132 154 IPR004000 -
Spst6g01741 446 PRINTS Actin signature 120 131 IPR004000 -
Spst6g01741 446 PRINTS Actin signature 186 199 IPR004000 -
Spst6g01741 446 PRINTS Actin signature 97 106 IPR004000 -
Spst6g01741 446 PRINTS Actin signature 211 230 IPR004000 -
Spst6g01741 446 PRINTS Actin signature 307 323 IPR004000 -
Spst6g01741 446 PANTHER ACTIN 78 439 IPR004000 -
Spst6g01741 446 SUPERFAMILY Actin-like ATPase domain 218 446 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01741 Spst-Chr6 16590221 16596070 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01741 70 446 Cytoskeleton Gene Families AT3G12110 94.164 0.0 749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01741 K10355 - gmx:100797704 755.362