Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01740 ATGTCCGAAAGAGTCCACTTTTCTTCTTCTTTGACACTTTCTCGCGAAACACTTCCCCTTGCTGCTGTTGCTGGTGCTTCTTCTGCCTTTGCTCTACCACACCAACCACATCCCCTGCAAACCGCGTTTCGTTCACGCAAGGTTTTAAAGATGGCTGATGCCGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGGCTGGTTTTGCTGGTGATGATGCTCCTAGAGCTGTGTTCCCCAGTATCATTGGGCGACCGCGCCACACTGGTGTAATGGTTGGGATGGGCCAGAAGGATGCTTATGTGGGTGATGAAGCCCAATCAAAAAGGGGTATACTCACCTTGAAGTATCCTATAGAGCATGGAATAGTCAGCAACTGGGATGATATGGAGAAGATTTGGCATCATACATTTTACAACGAGCTTCGTGTTGCCCCTGAAGAACACCCTGTACTTCTCACTGAGGCACCACTCAATCCCAAGGCCAACAGAGAGAAGATGACGCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTGGCAATTCAGGCTGTCCTGTCTCTGTATGCCAGTGGACGTACTACAGGTATTGTGCTTGATTCTGGTGATGGTGTGAGTCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCGCGATTTAACAGAGTACTTGGTGAAAATACTTACTGAAAGAGGATATTCCTTCAGCACCTCTGCTGAAAAGGAAATTGTCCGTGATGTGAAGGAGAAATTGGCATATGTGGCCCTTGATTTTGAACAAGAAATGGAGACTACCAAGAGTAGTTCTGCGGTGGAGAAGAGCTATGAATTGCCTGATGGACAGGTCATTACTATAGGTTCTGAGAGATTCCGTTGTCCAGAAGTACTGTTCCAGCCATCTCTAATTGGTATGGAAGCTACTGGAATTCATGAAACGACGTACAACTCCATCATGAAATGTGATGTTGATATTAGGAAGGATCTGTATGGAAACATTGTGCTTAGTGGAGGGTCTACTATGTTTCCTGGAATTGCTGATCGTATGAGCAAGGAAATCGGTGCTCTGGCACCGAGCAGCATGAAAATTAAGGTGGTTGCACCTCCTGAGAGGAAGTACAGTGTCTGGATTGGTGGTTCTATCTTGGCATCACTAAGTACCTTCCAACAGATGTGGATCTCTAAGGGTGAATATGATGAATCTGGGCCAGCTATAGTTCATCGGAAGTGCTTCTAA 1284 0.4595 MSERVHFSSSLTLSRETLPLAAVAGASSAFALPHQPHPLQTAFRSRKVLKMADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEYLVKILTERGYSFSTSAEKEIVRDVKEKLAYVALDFEQEMETTKSSSAVEKSYELPDGQVITIGSERFRCPEVLFQPSLIGMEATGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIGALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01740 427 CDD NBD_sugar-kinase_HSP70_actin 60 233 - -
Spst6g01740 427 ProSitePatterns Actins signature 2. 408 416 IPR004001 -
Spst6g01740 427 Pfam Actin 55 427 IPR004000 -
Spst6g01740 427 ProSitePatterns Actins and actin-related proteins signature. 156 168 IPR020902 -
Spst6g01740 427 SUPERFAMILY Actin-like ATPase domain 56 205 IPR043129 -
Spst6g01740 427 FunFam Actin, alpha skeletal muscle 86 123 - -
Spst6g01740 427 Gene3D - 60 421 - -
Spst6g01740 427 FunFam Actin, muscle 232 323 - -
Spst6g01740 427 PANTHER ACTIN 59 420 IPR004000 -
Spst6g01740 427 SUPERFAMILY Actin-like ATPase domain 199 427 IPR043129 -
Spst6g01740 427 FunFam Actin, alpha skeletal muscle 305 380 - -
Spst6g01740 427 FunFam Actin, alpha skeletal muscle 53 212 - -
Spst6g01740 427 PRINTS Actin signature 78 87 IPR004000 -
Spst6g01740 427 PRINTS Actin signature 192 211 IPR004000 -
Spst6g01740 427 PRINTS Actin signature 288 304 IPR004000 -
Spst6g01740 427 PRINTS Actin signature 101 112 IPR004000 -
Spst6g01740 427 PRINTS Actin signature 113 135 IPR004000 -
Spst6g01740 427 PRINTS Actin signature 167 180 IPR004000 -
Spst6g01740 427 SMART actin_3 57 427 IPR004000 -
Spst6g01740 427 Gene3D - 190 390 - -
Spst6g01740 427 FunFam Actin, alpha skeletal muscle 381 427 - -
Spst6g01740 427 Gene3D Actin; Chain A, domain 4 232 323 - -
Spst6g01740 427 ProSitePatterns Actins signature 1. 105 115 IPR004001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01740 Spst-Chr6 16587459 16590013 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01740 51 427 Cytoskeleton Gene Families AT3G12110 94.164 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01740 K10355 - gmx:100797704 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01740 6 16587459 16590013 Spst6g01740 6 16587459 16590013 ECH