Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01731 ATGAATGTTGTCCTAGTTTTTATAAGTTGTCTTCCCAACTTGGTTGTGCCTACGATGTTGTCATCGTTTATGTCCTTCTATGTTCTAGCGGTCATGTTTTATAATGGAACTGCAAATAAAACATTCTTACTGCTGTGTTGCATGGCGCTGTTCCTAATTTGGTGTTACGTGTTGGTATCTCTCTTTCGGCATTGTGCAGAATTGTTTATGTTAGATTATTACTATGAAAGGGAACAAATGGGAGACATTGAGTCTCTTCCAAATGCAAGGGCTCGAGTTGCCATTGCCAGAATAAGGGCTAACAGGGAACATTGGCAAACCATACAACTACATCCTTTTCCCTGCGAAACACGAACTACTGCTAGGTTAGCCATCAGAGCCTTGCCTCCTGCTGTATCTTTTCGTGATGATCAAACCAGTGAATCTCTACATGATTGTTCTATTTGCTTGGAAAAATTTATGAATGGAGACTCCATTCAACCATTTGGAGTGTGTGTCCATCAATTCCATTCCTCCTGCCTCAACTTGTGGTTGCTCAGAGGAAAATCTTCATGTCCACTCTGTCGTATGGAGTTGCCAATTCCTACCTACTCATCATGA 600 0.4133 MNVVLVFISCLPNLVVPTMLSSFMSFYVLAVMFYNGTANKTFLLLCCMALFLIWCYVLVSLFRHCAELFMLDYYYEREQMGDIESLPNARARVAIARIRANREHWQTIQLHPFPCETRTTARLAIRALPPAVSFRDDQTSESLHDCSICLEKFMNGDSIQPFGVCVHQFHSSCLNLWLLRGKSSCPLCRMELPIPTYSS 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01731 199 Pfam Ring finger domain 145 189 IPR001841 -
Spst6g01731 199 SUPERFAMILY RING/U-box 133 195 - -
Spst6g01731 199 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 39 190 IPR044675 -
Spst6g01731 199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 193 IPR013083 -
Spst6g01731 199 ProSiteProfiles Zinc finger RING-type profile. 146 189 IPR001841 -
Spst6g01731 199 SMART ring_2 146 188 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01731 Spst-Chr6 16525662 16526261 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01731 89 192 C3H Transcription Factor Family AT1G76410 33.654 2.26e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01731 - K22378 vun:114188632 153.295