Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01730 ATGGGAGATACCAATGTCAACCTTCCACCAGGGTTTCGATTCTATCCCACAGATGAAGAGCTTGTAGTCCATTTCCTTCACAGAAAAGCCTCACTTTTACCTTGCCACCCAGATGTCATCCCTGATCTTGAGGTCTACCAATATGATCCATGGGAACTTCATGGTAGAGCTTTGGAAGAGGGAAACCAATGGTACTACTACAGCAGAAGGACACAAAATACGGTCACTAGCAATGGGTATTGGAAACCAACGGGAATGGAAGAACCAGTTGTTTCAAGCTCAAACAACAAGAGAGTTGGCATGAAGAAATATTTTGTGTTTCATGTAGGAGAAGCCCCTGCTGGAATCAAAACCAATTGGATAATGCAAGAATATCGTCTATCAGATTCTGCTTCCTCTACCAGATCATCCAAAAGAAAACCAAAAACAGATTACAATAAATGGGTAATATGTCGTGTTTATGAGCGCAATGGAGAGGATGACAATGGAACAGAGCTCTCATGTTTAGATGAAGTATTCTTGTCAATGGATGATGATCTTGATGAAATAAGCTTGCCAAATTAG 564 0.4096 MGDTNVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDVIPDLEVYQYDPWELHGRALEEGNQWYYYSRRTQNTVTSNGYWKPTGMEEPVVSSSNNKRVGMKKYFVFHVGEAPAGIKTNWIMQEYRLSDSASSTRSSKRKPKTDYNKWVICRVYERNGEDDNGTELSCLDEVFLSMDDDLDEISLPN 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01730 187 PANTHER NAC TRANSCRIPTION FACTOR 56 8 162 - -
Spst6g01730 187 Gene3D NAC domain 17 160 IPR036093 GO:0003677|GO:0006355
Spst6g01730 187 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
Spst6g01730 187 FunFam NAC domain-containing protein 104 17 159 - -
Spst6g01730 187 SUPERFAMILY NAC domain 6 155 IPR036093 GO:0003677|GO:0006355
Spst6g01730 187 ProSiteProfiles NAC domain profile. 8 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01730 Spst-Chr6 16521106 16522268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01730 1 171 NAC Transcription Factor Family AT1G61110 40.526 5.94e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst6g01730 NAM 6.1e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00331 3 5997687 5998665 Spst6g01730 6 16521106 16522268 PCT