Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01701 ATGGCGGAGGGTTCTTCTTACGGATTGCGTCGTCCATTAGATTTAATTGTTTTTTCGACGCGATTTCTTGCTGCTGAGCTTCAGCTGTTGAACTCTGTTTCTTTTGTTGAGTGGATTCCTGTTATTGGTCTAAGTGTCTGGCCACCAAGTGGTTCGCTTTTTCTTTTTGATAGAAAGGTTTTGAGATACTTTAGAAAGGATGGACATAATTGGAGAAAGAAAAAGGATGGAAAAACTGTGAAAGAAGCTCATGAAAAGTTGAAGGTTGGAAGTGTTGATGTGTTGCACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAAAGGCGAAGCTACTGGATGCTTGAACCGGAGATGATGCACATTGTATTTGTCCATTACTTGGAAGTTAAGTCATACCCATGGAAGGTTGGTGTAGTGGCCGTAGCAGACAGACCAAATAACAGGCTGAATAGTGGCCATAGTGGGTGTTATACTGGCACTATGTTGATTCCAAAAATCCATCTGAACAGAGACATTAGGGCTATTATGGGTAACAAAAATATTGTAGTAAATACTGAAGGTGATGAGGTCCCATCAGATTCCCAAAAGGTAACTTCTCCATCATCTAGCCTTCCCACACATCATAGCGGTGTTACTTCACTTAGCACAGATTCTGTCAGCCCATCAAACAGTTTGATGTCTTTACGTGAAGATGCTGATTCTGAGGATCTTCACCAAGCTAGTTCTGGGTTGCGCCCATTACACAATTCACAACATATGACGAATGGTCCTTTGACGGAAAAGACTGATGCTGGTTTGAACAGTTCATATCATATGCATCCCTTTTCAGGTGATCATGGACAGTCATCAATTTCTGGAACAGATTATATCCCAGTTGTTCATGGGGATGAATTTAGAGGAAATGACACAGCTTATTTTGATGGTGAGAGAACACATGTCTCGGCTCCATGGGACACCGACTTGCAAAGCACTGCCAAATTGCATAATGATCCTTCTCTTCAATCATTTCCTTCCATCCCATCTAGTTCAATGGGTAACGCCTTTGAACAAGAACATACCAATTTTGGTGTCCTTTTGACGTGCAAAAGAGGTCTCACTGAGGAAGAAGAGAGCTCTCACGGTTTCCAATCAAGTTGGCAGATGCAGATTCCTTTTGAAGACAATTTAGGAGACATGCCAATGTTAACCCAAACCCAAACCCAATCATTTGATTTGCAATTTGGATCTGATTATGACACCGGTATACTGGGGAATGAAACTCATAATGCAAGTTCTGGAATTTCTCCGATCATATACAGTTTTCATGGTGAACCAAAAGAGCAGCTTATTCAGAAACACTATCCACAAGAGCATGCAGATGGACAATCTCAACATGCTCTAAAATCCAATTCTGCAAATAAAGTTTTTGATGAAGAAACTATCAATTATGGCTTAACTGTGAAGCGCACATTATTGGACAAAGATGAGAGCTTGAAGAAGGTTGATAGCTTCTCTCGGTGGGTTACTAAAGAACTTGGAGAGGTGGCTGATTTGAATATGCAGTCCACACCTGGTATCTCATGGAGTACGGATGAATGCCAGCATGTGATAGATGATGCTTCATTGAGCCCATCAGTCTCTCAGGACCAATTGTTTAGCATCAATGATTTTTCTCCTAAATGGGCTTATGCTGAGTCAGATATTGAGGTATTGATTATTGGATCATTTTTGAAGAGTCAACCAGAGGTGACAACATGTAACTGGTCCTGTATGTTTGGGGAAGTTGAGGTTACTGCTGAGGTTTTAGCTGATGGAATTTTGTGCTGTCAAGCTCCGCGTCATAAAGTTGGACGGGTTCCATTCTATGTAACATGTTCCAATAGGTTAGCTTGCAGTGAAGTGCGGGAATTCGATTTCAGAGAAGGCTTTGCTGGAAATGTAGATTTTGCTGATTTTTATGACAGTTCCACTGAAATGCTGCTTCATTTGCGACTGGAGGATTTTCTTACTTTAAAGCCAGTGGACCCTTCAAAACATTCTTTTGAGGGTGATATGGAGAAAAGGAACTTAATTTTCAAGCTTATTTCACTGAGAGAGGAAGAGGAATATTCCATTAAGGATGAAGCAACTACAGAATTGGATATATCCCAACACATGGTGAAGGAGCATCTGTTTCACAGGCAAGTTAAAGAGAAGCTGTACTCATGGCTTCTTCACAAAGTAACTGAGAGTGGTAAAGGACCAAATGTATTAGATGAGGTTGGGCAAGGTGTGCTACATTTAGCAGCTTTTCTTGGTTATGATTGGGCCATAAATCCAATTATATCTGCCGGAGTAAATATCAATTTCCGAGATGTGAATGGATGGACAGCTCTTCATTGGGCTGCATTCTGTGGCAGAGAGCGGACAGTTGCTTTCCTGGTCTCCATGGGAGCAGATTGTGGAGCACTGACAGATCCATCTCCTGCATTTCCGTCTGGTAGAACAGCTGCAGATCTTGCCTCTGGGAATGGGCACAAAGGAATCTCTGGTTTTCTTGCTGAATCTTCATTAACCCACCATCTTGAAACCCTCAGAATGGATGATCAAAAAGGTGGTCGGGAAGAAATTCCAGGAATGAAAGTGGTGCAGACAGTTTCAGAACGAACTGCAACACCTTTGCTCTTTGGTGATATGCCAGATGCCCTCTGCCTCAAGGATTCGCTTACTGCTGTGCGGAATGCAACACAAGCTGCTGATCGTATACATCAAGTATTCAGAATGCAGTCATTTCAGAGGAAGCAGTTAACTCAGTATGAAGCTGATGATGAGTTTGGATTGTCAGATCAGCAAGCTCTTTCCCTTCTAGCTTCTAGGGCATGCAAATCTAGACAAGGAGATGGTTTAGCCAATGCTGCTGCAATACAGATACAGAAAAAGTTTCGTGGTTGGAAGAAGAGAAAAGAATTCTTGATGATTCGGCAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTACGGAAACAGTATAAAACATTCATCTGGTCGGTGGGAATCCTAGAGAAGGTCATATTACGTTGGAGGCGCAAGGGTAGTGGTTTACGTGGATTTCGACCAGATGCCCTTAATAAAGTCCCCAGTCAAGAAAATGATTCTCAGAAAGAGGATGATTATGATTATCTCAAGGAGGGACGGAAACAAAAGGAAGAGAAGATCCAAAAGGCCTTATCGAGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGCGCCCAATACCGGCGTCTGCTAAATGTTGTCGAGGACATCCGTCAAACCAAGCCATCTAACGAGGGTTTGACCAATTCTGAAGAGACAGCTGATGGTGTGGAGGATTTGATTGATATTGATATGCTTTTAGACGATGACAATTTCATTCCTATAGCATTTAACTGA 3405 0.4209 MAEGSSYGLRRPLDLIVFSTRFLAAELQLLNSVSFVEWIPVIGLSVWPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEPEMMHIVFVHYLEVKSYPWKVGVVAVADRPNNRLNSGHSGCYTGTMLIPKIHLNRDIRAIMGNKNIVVNTEGDEVPSDSQKVTSPSSSLPTHHSGVTSLSTDSVSPSNSLMSLREDADSEDLHQASSGLRPLHNSQHMTNGPLTEKTDAGLNSSYHMHPFSGDHGQSSISGTDYIPVVHGDEFRGNDTAYFDGERTHVSAPWDTDLQSTAKLHNDPSLQSFPSIPSSSMGNAFEQEHTNFGVLLTCKRGLTEEEESSHGFQSSWQMQIPFEDNLGDMPMLTQTQTQSFDLQFGSDYDTGILGNETHNASSGISPIIYSFHGEPKEQLIQKHYPQEHADGQSQHALKSNSANKVFDEETINYGLTVKRTLLDKDESLKKVDSFSRWVTKELGEVADLNMQSTPGISWSTDECQHVIDDASLSPSVSQDQLFSINDFSPKWAYAESDIEVLIIGSFLKSQPEVTTCNWSCMFGEVEVTAEVLADGILCCQAPRHKVGRVPFYVTCSNRLACSEVREFDFREGFAGNVDFADFYDSSTEMLLHLRLEDFLTLKPVDPSKHSFEGDMEKRNLIFKLISLREEEEYSIKDEATTELDISQHMVKEHLFHRQVKEKLYSWLLHKVTESGKGPNVLDEVGQGVLHLAAFLGYDWAINPIISAGVNINFRDVNGWTALHWAAFCGRERTVAFLVSMGADCGALTDPSPAFPSGRTAADLASGNGHKGISGFLAESSLTHHLETLRMDDQKGGREEIPGMKVVQTVSERTATPLLFGDMPDALCLKDSLTAVRNATQAADRIHQVFRMQSFQRKQLTQYEADDEFGLSDQQALSLLASRACKSRQGDGLANAAAIQIQKKFRGWKKRKEFLMIRQRIVKIQAHVRGHQVRKQYKTFIWSVGILEKVILRWRRKGSGLRGFRPDALNKVPSQENDSQKEDDYDYLKEGRKQKEEKIQKALSRVKSMVQYPEARAQYRRLLNVVEDIRQTKPSNEGLTNSEETADGVEDLIDIDMLLDDDNFIPIAFN 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01701 1134 ProSiteProfiles Ankyrin repeat profile. 782 814 IPR002110 GO:0005515
Spst6g01701 1134 ProSiteProfiles IQ motif profile. 958 987 IPR000048 GO:0005515
Spst6g01701 1134 MobiDBLite consensus disorder prediction 188 230 - -
Spst6g01701 1134 Gene3D - 958 1004 - -
Spst6g01701 1134 Pfam IPT/TIG domain 549 623 IPR002909 -
Spst6g01701 1134 Pfam Ankyrin repeats (3 copies) 754 835 IPR002110 GO:0005515
Spst6g01701 1134 Gene3D - 713 852 IPR036770 -
Spst6g01701 1134 MobiDBLite consensus disorder prediction 1029 1048 - -
Spst6g01701 1134 MobiDBLite consensus disorder prediction 188 268 - -
Spst6g01701 1134 ProSiteProfiles Ankyrin repeat region circular profile. 782 808 - -
Spst6g01701 1134 ProSiteProfiles IQ motif profile. 981 1005 IPR000048 GO:0005515
Spst6g01701 1134 SUPERFAMILY Ankyrin repeat 737 843 IPR036770 -
Spst6g01701 1134 SMART ANK_2a 821 850 IPR002110 GO:0005515
Spst6g01701 1134 SMART ANK_2a 782 811 IPR002110 GO:0005515
Spst6g01701 1134 SMART ANK_2a 749 778 IPR002110 GO:0005515
Spst6g01701 1134 MobiDBLite consensus disorder prediction 245 268 - -
Spst6g01701 1134 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 947 1008 IPR027417 -
Spst6g01701 1134 Gene3D Immunoglobulins 541 637 IPR013783 -
Spst6g01701 1134 SMART iq_5 957 979 IPR000048 GO:0005515
Spst6g01701 1134 SMART iq_5 980 1002 IPR000048 GO:0005515
Spst6g01701 1134 Pfam CG-1 domain 45 130 IPR005559 GO:0003677
Spst6g01701 1134 Pfam IQ calmodulin-binding motif 960 978 IPR000048 GO:0005515
Spst6g01701 1134 Pfam IQ calmodulin-binding motif 983 1002 IPR000048 GO:0005515
Spst6g01701 1134 FunFam Calmodulin-binding transcription activator 2 957 1005 - -
Spst6g01701 1134 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 48 1096 - -
Spst6g01701 1134 ProSiteProfiles CG-1 DNA-binding domain profile. 18 137 IPR005559 GO:0003677
Spst6g01701 1134 SMART CG_1_2 23 132 IPR005559 GO:0003677
Spst6g01701 1134 SUPERFAMILY E set domains 549 634 IPR014756 -
Spst6g01701 1134 FunFam Calmodulin-binding transcription activator 2 542 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01701 Spst-Chr6 16212914 16224024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01701 48 1115 CAMTA Transcription Factor Family AT5G64220 49.676 0.0 969
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Spst6g01701 Ank_2 1.2e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01701 K21596 - gmx:100818124 1804.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00365 3 6441234 6453003 Spst6g01701 6 16212914 16224024 PCT