Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01684 ATGGAAAACGACGACGTCGACATGCACGCAGCCGACACCAATGAAGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTGCTTTGCGAGAGATGCAGGCCAAGGTCGAGAAGGAAATGGGATCCGTGCAAGATCCTGCAACTGCTTCTGCGAGTCAGTCTAATAGAGAGGAAATAGATGCTCGATCAGTCTTTGTAGGCAATGTGGACTATTCTTGCACTCCTGAAGAAGTGCAACAGCATTTTCAGTCTTGTGGAACAGTAAACAGAGTCACCATTCGAACTGACAAGTTTGGCCAACCCAAGGGTTATGCCTATGTTGAGTTCCTTGAGGTGGAAGCTGTCCAGGAGGCCCTTTCGCTGAATGAATCTGAACTTCATGGGCGTCAATTAAAGGTAACAGCTAAAAGAACCAACATACCAGGGATGAAACAGTATCGTCCCCGCCGTTCAAATCTTTACATGGGGGGCTTTCGAGGCAGAACCCCATATGCACCTCCCTTTATCTATTCTCCATATGGATATGGAAAGGTTCCAAGGTTCAGAATGGCAATGCGCTACAGCCCCTATTATTAA 591 0.4704 MENDDVDMHAADTNEELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPATASASQSNREEIDARSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALSLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNLYMGGFRGRTPYAPPFIYSPYGYGKVPRFRMAMRYSPYY 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01684 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 143 IPR000504 GO:0003723
Spst6g01684 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 137 IPR000504 GO:0003723
Spst6g01684 196 Gene3D - 4 140 IPR012677 -
Spst6g01684 196 Coils Coil 10 44 - -
Spst6g01684 196 SMART rrm1_1 68 139 IPR000504 GO:0003723
Spst6g01684 196 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 16 152 - -
Spst6g01684 196 CDD RRM_II_PABPs 68 139 - -
Spst6g01684 196 MobiDBLite consensus disorder prediction 42 62 - -
Spst6g01684 196 SUPERFAMILY RNA-binding domain, RBD 55 167 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01684 Spst-Chr6 16085519 16090220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01684 68 138 Eukaryotic Initiation Factors Gene Family AT2G36660 31.944 4.44e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01684 K14396 - gmx:100791351 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00376 3 6573404 6578132 Spst6g01684 6 16085519 16090220 PCT