Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01681 ATGTGTGTGCGCAACTCCAAGCCTTGTGGAGGCACAAAATTCCAGTATGTAGAGAATACTATTGTATGCCATGATTATCAGGAGATAAAAATTCAAGAAAGTACACAGGTGCTAGGTGTTGGGGCAATTCCTCGTTCAATTCTTGTCATCTTAAAGGATGACCTCGTGGATGTTGTTAAAGCTGGAGGGTCATGTGATGAATTCATGAATGCTATATATGATTTTGGTTATGGAGGATATGATTCTCTTTTGCTTGCAGATGATGTTATTGTCACTGGTGTCATAACAGCAAAATGGGCTTCAGAGTTGAAGGATGTGCGTTGTGACCTTGATCCTGTATTAATTGCCAACAATGTAAGGAGAGTCAATGAACTGAAGTCAGAAATTGATATTTCTGATGATATTGTTATGAAATTCAAGCAGTTTTGGGCTAACTTCAAAGATTCACCTCTAAAAGGTGGTATTTTGATGCACACCTCTGAAATTGGACTGCACAATGCAGCGTTATTCATCACGTATAATTGCTGGTCGAACCCTGTCCAGACTCCTTACGTTCCAAATTTGGTTAATGACAGAAGGAATGCTATTCTACGAGGAATTTGCCCGCAAGTATTTGGCCTTTTCACTGTTAAGCTGGCTGGTAAATACGTTCACCTTGCATTAACTGTTATTGGAGGTGTGCAACATGTCGATGCTTCTGGAACTAGGGTAAGAGGGGAGTCCCACTTACTCTTGGTTGGTGATCCAGGCACTGGAAAATCTCAGTTTCTGAAATTTGCTGCAAAATTGAGCAACCGATCTGTTATTACCACTGGATTGGGAAGCACCAGTGCAGGATTGACTGTTACTGCAGTGAAGGATGGAGGCATCTTGAATTCACCACTTGCTATTAAAGCTATTTATAATCATGTTCTAGTTGCACAGGAAGTCCTAGATTTTGTTGATCATTGGGAATGGATGTTGGAAGCTGGGGCTCTTGTTTTGGCAGATGGAGGATTGTGTTGCATAGATGAATTTGACAGAAGAGCTGGACTAGATCTAAATTTAATTGATTTGACATTTCCAACACCTGAAAGGTTTGACACCCTTAAGTTGGGTGATGAAGTTTCACTACATGTTTTCATGAAACTTGAAAGTCCTGATTTAATGGAAATTCTGGCAGGACTGGAGCATGATAGAGCAACAATACATGAAGCCATGGAGCAGCAGACAATTAGTGTTGCCAAGGCTGGTCTTGTGACAACACTCAGCACTAGAACAACTGTGTTTGGTGCTACAAATCCCAAGGGACAGTATGATCCTGATCAACGTATCACTTACGGCATTGAGTTCTTTCCTCTTGCTTCTAGCTTATGTCTGAAGAAGTTTACTCTTGCTTCAGTTCAATACTTGTTCGATATTGTCCTTGTTCTATTGGATACAAAAAATCCTGATTGGGATGCAGTAGTTTCATCTCATATTCTTTCTGAGGAAGAAGCGGATAGAACCACTAATGACAAAGATCTGGTTAATAGCTGGCCACTTCCTACACTCAAGAGGTACATACACTATGTGAAAGATCATTTCAGACCAGTCCTAACGAGAGAGGCTGAAGAAGTTATATCCAGCTATTATCAACTTCAAAGGAAATCTGCAAATCATAATGCAGCTAGAACAACTGTCCGCATGTTGGAAAGTTTGATACGCCTAGCACAAGCCCATGCAAGGCTGATGTTCAGAAATGAGGTGACTCGACTAGATGCCATAACGGCTATTTTATGCATAGAATCCTCCATGACTACCTCAGCTATCGTGGATTGCATTGGGAATGCTCTGCATTCCAATTTTACTGACAACCCTGATGAGGAATTTTGGTTGAACAGTTCTATGCTTGAAGGACAAAGGTTCGGGTCACAAGCTAGGGAATTATCCAATTTTCTTCCTGATGTATATGGTTCTGAATATGTTAAAGAGGAAACGTTGTTGAATTGTCGAAAAGCAGGGAAAAAAAGGGAAGAGTCTGCGACGCTGTTTCAATTGTGGTCGTTTCGGTGCCCTATCTCATCTTTATACAGGGGCGAATCCAGGAGGTACAACAATAAAACAAGGGGACGCCATCATTTGACGACGCAGAAGAAGCAGGAAATTAAGGAAGCCTTTGAATTATTTGATACTGATGGCTCAGGTACTATTGATGCCAAGGAGCTGAACGTTGCCATGAGGGCCCTTGGATTTGAGATGACTGAGGAGCAAATTAAACAAATGATAGCAGATGTCGACAAGGATGGAAGTGGAGCAATTGATTATGAGGAATTTGAGTACATGATGACAGCCAAAATTGGAGAAAGGGACACTAAGGAGGAGCTCATGAAAGCTTTCCATATTATTGATCATGATAACAATGGAAAGATATCTGCATCAGACATCAAGCGCATTGCAAAAGAGCTAGGTCAAAATTTCACTGATAGAGAGATTCAGGAGATGGTTAATGAAGCAGACCAAGATAATGATCGAGAGGTTAGTCCAGAGGAATTCATCAAGATGATGAACAGAACACGCTACCATCACTAG 2550 0.4106 MCVRNSKPCGGTKFQYVENTIVCHDYQEIKIQESTQVLGVGAIPRSILVILKDDLVDVVKAGGSCDEFMNAIYDFGYGGYDSLLLADDVIVTGVITAKWASELKDVRCDLDPVLIANNVRRVNELKSEIDISDDIVMKFKQFWANFKDSPLKGGILMHTSEIGLHNAALFITYNCWSNPVQTPYVPNLVNDRRNAILRGICPQVFGLFTVKLAGKYVHLALTVIGGVQHVDASGTRVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGILNSPLAIKAIYNHVLVAQEVLDFVDHWEWMLEAGALVLADGGLCCIDEFDRRAGLDLNLIDLTFPTPERFDTLKLGDEVSLHVFMKLESPDLMEILAGLEHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGQYDPDQRITYGIEFFPLASSLCLKKFTLASVQYLFDIVLVLLDTKNPDWDAVVSSHILSEEEADRTTNDKDLVNSWPLPTLKRYIHYVKDHFRPVLTREAEEVISSYYQLQRKSANHNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFTDNPDEEFWLNSSMLEGQRFGSQARELSNFLPDVYGSEYVKEETLLNCRKAGKKREESATLFQLWSFRCPISSLYRGESRRYNNKTRGRHHLTTQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQIKQMIADVDKDGSGAIDYEEFEYMMTAKIGERDTKEELMKAFHIIDHDNNGKISASDIKRIAKELGQNFTDREIQEMVNEADQDNDREVSPEEFIKMMNRTRYHH 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01681 849 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 601 IPR027417 -
Spst6g01681 849 ProSitePatterns EF-hand calcium-binding domain. 826 838 IPR018247 -
Spst6g01681 849 CDD EFh 708 770 IPR002048 GO:0005509
Spst6g01681 849 ProSiteProfiles EF-hand calcium-binding domain profile. 740 775 IPR002048 GO:0005509
Spst6g01681 849 SUPERFAMILY EF-hand 697 844 IPR011992 -
Spst6g01681 849 Gene3D - 771 849 - -
Spst6g01681 849 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 8 610 IPR031327 GO:0003677|GO:0005524|GO:0032508
Spst6g01681 849 CDD EFh 781 842 IPR002048 GO:0005509
Spst6g01681 849 ProSiteProfiles MCM family domain profile. 219 487 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst6g01681 849 Gene3D - 188 597 IPR027417 -
Spst6g01681 849 ProSiteProfiles EF-hand calcium-binding domain profile. 777 812 IPR002048 GO:0005509
Spst6g01681 849 SMART mcm 1 593 IPR031327 GO:0003677|GO:0005524|GO:0032508
Spst6g01681 849 ProSitePatterns EF-hand calcium-binding domain. 753 765 IPR018247 -
Spst6g01681 849 ProSiteProfiles EF-hand calcium-binding domain profile. 813 848 IPR002048 GO:0005509
Spst6g01681 849 FunFam Centrin 2 772 848 - -
Spst6g01681 849 ProSitePatterns EF-hand calcium-binding domain. 790 802 IPR018247 -
Spst6g01681 849 Pfam MCM P-loop domain 193 287 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst6g01681 849 Pfam MCM P-loop domain 316 343 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst6g01681 849 Pfam MCM P-loop domain 390 489 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst6g01681 849 Pfam MCM OB domain 6 65 IPR033762 -
Spst6g01681 849 SUPERFAMILY Nucleic acid-binding proteins 7 63 IPR012340 -
Spst6g01681 849 FunFam probable calcium-binding protein CML20 684 771 - -
Spst6g01681 849 PRINTS Mini-chromosome maintenance (MCM) protein family signature 238 253 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst6g01681 849 PRINTS Mini-chromosome maintenance (MCM) protein family signature 324 338 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst6g01681 849 ProSiteProfiles EF-hand calcium-binding domain profile. 704 739 IPR002048 GO:0005509
Spst6g01681 849 Pfam EF-hand domain pair 707 770 IPR002048 GO:0005509
Spst6g01681 849 Pfam EF-hand domain pair 780 842 IPR002048 GO:0005509
Spst6g01681 849 SMART efh_1 817 845 IPR002048 GO:0005509
Spst6g01681 849 SMART efh_1 744 772 IPR002048 GO:0005509
Spst6g01681 849 SMART efh_1 708 736 IPR002048 GO:0005509
Spst6g01681 849 SMART efh_1 781 809 IPR002048 GO:0005509
Spst6g01681 849 ProSitePatterns EF-hand calcium-binding domain. 717 729 IPR018247 -
Spst6g01681 849 Gene3D - 11 122 IPR012340 -
Spst6g01681 849 Gene3D - 683 770 - -
Spst6g01681 849 Pfam MCM AAA-lid domain 510 591 IPR041562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01681 Spst-Chr6 16051925 16069372 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01681 4 619 Core DNA Replication Machinery Family AT2G14050 59.157 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01681 K10738 - gmx:100776255 735.717