Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01680 ATGTTGAATAAACTTGTTTACTTGAGAGGTGTCGCTTCCACAGCAACATCGGGTTCCAATTTTGTCCACCACTACCCATTACACTTTTCTTTGCTTTTCTGCACAACCACTTCAAATTCACGCTCATTTGCAGTATCCTACCTCATTTACAACTTTGGGTTCTCCCCTGACTCTGCTTCCAGAACTTCTACTACCTATAATATTTGTTTCCAGAGCCCCGAAAAGCCTGAGTCAGTGATCAGTTTCTTCAGAAACCGCGGTTTCTCTAAGCCCCAAATAAATAATATGGTTAGAAAGCTACCATGGCTGCTTTCCTGTGACCCCTGCAAAAGGATATTACCAAAGTTTGAATTTTTTCTCTCAAAGGGTGTTTCTAGCTCTAAAATTGTTGAGCTAGTGAGTACATGCCCTGAAGTACTTGCTCCAAGCCTGAAAAATCATATAGTCCCAACCTATGAATTGGTATATAGATTCTTGCAATCTGATGTGCACACTGTTGCTTGTATGTGTGGTAATTCATTTTTCACTGGCGGCTATCGTCTGGCACGAAACGTCAGACTGCTGCAAGAGAATGGAGTGAGAGAATCAAACATTGCACTATTGTTTCGGAGCCGTTGTAAGGCTGTGTTTTCCTCGACTGATATTGTTAAGTTGGTGGAGGAGTTAACGGGTTTGGGGTTTGATCCTTCAAAATCAGCTTTTGCTGTAGCCTTGATTGCCGTAACAAGTTTTAGTCGATCTCGGTGGAAGGAGAAAGTTGATGCCTTTAAAAAATGGGGTTGGTCTGATGAAGCCGTCCTTGAAGCATTTAGGAGGTACCCTCACTGTATGTTGGCATCCATTGAAAAAATAAATATTGTGATGAACTTTTGGGTCAATCAGTTGGGTTGGGATGCTTTGAACATTGCCCGATGTCCAAAGATTTTAGGGTCGAGTATGGAGAAAACAATCATTCCAAGGGCTCTTGTTGTCCAGCATTTACTTGTCAAAGGCTTGTGGAAAAAGAGTGCCAGCCTTGTTACCCCATTTACTGTTTCTGAAACCCGGTTTCTTAAAAAGTATGTGATATGTTTTAAGGAGGAAAAATGTCAACTATTAAAGCTGTACCAGGAGAAAGTAAGTGTTCAAGGTAAAGAGGAGGATAGTGCAGCATGCGCCAGTTATCAAAATGTTAAGTCATGA 1182 0.4137 MLNKLVYLRGVASTATSGSNFVHHYPLHFSLLFCTTTSNSRSFAVSYLIYNFGFSPDSASRTSTTYNICFQSPEKPESVISFFRNRGFSKPQINNMVRKLPWLLSCDPCKRILPKFEFFLSKGVSSSKIVELVSTCPEVLAPSLKNHIVPTYELVYRFLQSDVHTVACMCGNSFFTGGYRLARNVRLLQENGVRESNIALLFRSRCKAVFSSTDIVKLVEELTGLGFDPSKSAFAVALIAVTSFSRSRWKEKVDAFKKWGWSDEAVLEAFRRYPHCMLASIEKINIVMNFWVNQLGWDALNIARCPKILGSSMEKTIIPRALVVQHLLVKGLWKKSASLVTPFTVSETRFLKKYVICFKEEKCQLLKLYQEKVSVQGKEEDSAACASYQNVKS 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01680 393 FunFam Mitochondrial transcription termination factor-like 144 362 - -
Spst6g01680 393 Gene3D Transcription termination factor 3, mitochondrial 156 367 IPR038538 -
Spst6g01680 393 PANTHER CGI-12 PROTEIN-RELATED 40 360 IPR003690 GO:0003690|GO:0006355
Spst6g01680 393 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Spst6g01680 393 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Spst6g01680 393 SMART mt_12 267 298 IPR003690 GO:0003690|GO:0006355
Spst6g01680 393 SMART mt_12 299 330 IPR003690 GO:0003690|GO:0006355
Spst6g01680 393 Pfam mTERF 80 227 IPR003690 GO:0003690|GO:0006355
Spst6g01680 393 Pfam mTERF 243 351 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01680 Spst-Chr6 16036019 16037200 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Spst6g01680 mTERF 1.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01680 K15031 - gmx:102663414 519.62