Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01676 ATGTTGAATAAACTTGTCTACTTGAGAGGTGTCGCTTCCTCAGCAACATTGGGTTCCCCTTTTATTCACCACTACCCATTACTATTTTCTCTGCGTTGCTGCACAACCACTTCAAATTCACGCTCATTTGCAGTATCCTACCTCATTTACAACTTTGGGTTCTCCCCTGAATCTGCTTCCAGAACTTCTACTACCTATAATATTTGTTTCCAGAGCCCCGAAAAGCCTGAGTCAGTGATCAGTTTCTTCAGAAACCTCGGTTTCTCTAACCCCCAAATAAATGATATGGTTAGAAGGCAACCATGGCTGCTTTCCTGTAACCTCTGCAAAAGGATATTGCCAAAGATTGAATTTTTTCTCTCTAAAGGTATTTCTAGCGCTGAATTTGTTAACCTTGTGGGTAAGTGTCCTAGCGTACTGATTCCAAGCCTGAAGAATCATATAGTCCCAACCTATGAATTGGTATATAGATTCTTGCAATCTGATGTGAACACTGTTGCTTGTATGTTTGGTAATTCATTTTTCACTGGCGGCTATCGTCTGGCACGCAACGTCAGAATGCTGCAAGAGAATGGAGTGAGTGAATCAAACATTGCACGATTGTTTCGGAGCCGTTGTAAGGCTGTGTTTTGCTCGACTGATATTGTTAAGTTGGTGGAGGAGTTAAAGGGTTTGGGGTTTGATCCTTCAAAATCAGCTTTTGCTATAGCCTTGATTGCCATAACAAGTTTGAATGGACCCCGGTGGATGAAGAAAGTTGATGCCTTTAAAAAATGGGGTTGGTCTGATGAAGCCGTCCTTGAAGCATTTAGGAGGCACCCTCACTGTATGTTGGCATCCATTGACAAAATAAATATTGTGATGAACTTTTGGGTCAATCAGTTGGGTTGGAATGCTTTGGACATTGCCCAAGTTCCAAAGATTTTAGGGTCGAGTATGGAGAAAACAATCATTCGAAGGGCACTTGTTGTCCAGCATTTACTTGTCAAAGGCTTGTTGAAAAAGAGTGCCAGCCTTGTTACCCCATTTGCTGTTTCTGAAACGCGGTTCGTTAAAAACTATGTGATATGTTTTAAGGAGGAAAAATGTCAACTATTAAAGCTGTACCAGGAGAAAGTAAGTGATCAAGGTAAAGAGGAGGATAGTGCAGCATGCGCCAGTAATCAAAATGTTAACTCATGA 1182 0.4137 MLNKLVYLRGVASSATLGSPFIHHYPLLFSLRCCTTTSNSRSFAVSYLIYNFGFSPESASRTSTTYNICFQSPEKPESVISFFRNLGFSNPQINDMVRRQPWLLSCNLCKRILPKIEFFLSKGISSAEFVNLVGKCPSVLIPSLKNHIVPTYELVYRFLQSDVNTVACMFGNSFFTGGYRLARNVRMLQENGVSESNIARLFRSRCKAVFCSTDIVKLVEELKGLGFDPSKSAFAIALIAITSLNGPRWMKKVDAFKKWGWSDEAVLEAFRRHPHCMLASIDKINIVMNFWVNQLGWNALDIAQVPKILGSSMEKTIIRRALVVQHLLVKGLLKKSASLVTPFAVSETRFVKNYVICFKEEKCQLLKLYQEKVSDQGKEEDSAACASNQNVNS 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01676 393 FunFam Mitochondrial transcription termination factor-like 144 362 - -
Spst6g01676 393 Pfam mTERF 248 350 IPR003690 GO:0003690|GO:0006355
Spst6g01676 393 Pfam mTERF 80 228 IPR003690 GO:0003690|GO:0006355
Spst6g01676 393 Gene3D Transcription termination factor 3, mitochondrial 176 367 IPR038538 -
Spst6g01676 393 Gene3D Transcription termination factor 3, mitochondrial 58 175 IPR038538 -
Spst6g01676 393 PANTHER CGI-12 PROTEIN-RELATED 40 360 IPR003690 GO:0003690|GO:0006355
Spst6g01676 393 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Spst6g01676 393 SMART mt_12 299 333 IPR003690 GO:0003690|GO:0006355
Spst6g01676 393 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Spst6g01676 393 SMART mt_12 19 55 IPR003690 GO:0003690|GO:0006355
Spst6g01676 393 SMART mt_12 267 298 IPR003690 GO:0003690|GO:0006355
Spst6g01676 393 SMART mt_12 199 228 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01676 Spst-Chr6 16000748 16001929 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Spst6g01676 mTERF 7.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01676 K15031 - gmx:102663414 506.138