Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01675 ATGTTTCCTTCCCAACGCTTCAAACCCCTTTTTCTCTATCTCAAGTCACTCACAAGAACACATCTTCAAACCCCGAAACCCAAGAATCCTTTCCCCTTGATACTCTCTCTGAAACACACCTCAACTACTTCACAGCAACACTCTTTCACAGTTTCCTACCTCGTAAACAATTGCGGGTTTTCCCCAGAAACCGCTCTCAAAGCCTCCAAATTCACTCAATTCGAAACCGCCGACAAGCCCGACTCAGTCATCGCCTTCTTCAGAGACAACGGGTTCAGCAACACCCAGATAAACAACATCGTTAGGAGAGCACCCAATGTGCTCACATGCGACCCCCACAACAGGGTTTTCCGAAAGTTCGAGTTTTTATTCTCTAAAGGGGCCTCACACTCTTACATTGTGGAACTGGTTAATAAGAGCCCCAGAATCCTTTACTCGAGCCTCGAGAATAACATTATCCCTTCCTATGAACTGGTAAGGAAGTTTCTTCAAACTGACGAGAAAACGATGGAGTGCATACTCGCTTGTGGGCATTTCTTTGGTACTGATCGTGTGGTGCAGAATGTGAAACTTTTGGTTGATGATGGAGTCACTGATACTGTCATAGCCTTTTTGTTTCGCAGGAGACTTTCTATAGTATTGTCCTCTGGCTTGAAGAGGACTTTGGATGAGGTTAAAGAGATGGGTTTTGACCCTTCTAAGTTGAAGTTTGCGATCGCGTTGCTGGCAAAAAAGACCATTCCAAAATCGCGGTGGGACGCAAAAGTTGATGTCTTGAAGAGCTGGGGTTGGTCTGAAGAACTGGTTCTCAGTGTGTTTAAGAGGCAGCCCCTCATAATGTTGGTGTCCCAAGATAAGATTGATAGGATTATGAGATTTTGGGTTAAGCAATTAGGTTGGGACTATTTGACCCTTGCCAAGAAGCCAGAGATTTTTGGATTTAGTTTAGAGAGAAGGATCATTCCGAGGGCACTTGTTGTGCAGTATTTACTCGGGAAAGGTTTGAGGAGAAAGAGTGCCAGTTTGCTTTCGCCATTTTGTGTTTCTGAAAAGGAATTTATTGAAAAGTATGTCATGCGTTTTAAGGAGGAGACAAGTGAACTATTAACGCTGTACCAAATGAATGTTCAAGGAAAAAAAGAGGATAATCAAATGGTTGATGTATGA 1167 0.4336 MFPSQRFKPLFLYLKSLTRTHLQTPKPKNPFPLILSLKHTSTTSQQHSFTVSYLVNNCGFSPETALKASKFTQFETADKPDSVIAFFRDNGFSNTQINNIVRRAPNVLTCDPHNRVFRKFEFLFSKGASHSYIVELVNKSPRILYSSLENNIIPSYELVRKFLQTDEKTMECILACGHFFGTDRVVQNVKLLVDDGVTDTVIAFLFRRRLSIVLSSGLKRTLDEVKEMGFDPSKLKFAIALLAKKTIPKSRWDAKVDVLKSWGWSEELVLSVFKRQPLIMLVSQDKIDRIMRFWVKQLGWDYLTLAKKPEIFGFSLERRIIPRALVVQYLLGKGLRRKSASLLSPFCVSEKEFIEKYVMRFKEETSELLTLYQMNVQGKKEDNQMVDV 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01675 388 FunFam Mitochondrial transcription termination factor-like 148 365 - -
Spst6g01675 388 PANTHER CGI-12 PROTEIN-RELATED 45 362 IPR003690 GO:0003690|GO:0006355
Spst6g01675 388 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
Spst6g01675 388 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Spst6g01675 388 SMART mt_12 302 336 IPR003690 GO:0003690|GO:0006355
Spst6g01675 388 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Spst6g01675 388 SMART mt_12 202 231 IPR003690 GO:0003690|GO:0006355
Spst6g01675 388 Pfam mTERF 254 353 IPR003690 GO:0003690|GO:0006355
Spst6g01675 388 Pfam mTERF 85 288 IPR003690 GO:0003690|GO:0006355
Spst6g01675 388 Gene3D Transcription termination factor 3, mitochondrial 182 368 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01675 Spst-Chr6 15985436 15986602 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Spst6g01675 mTERF 4.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01675 K15031 - gmx:102666739 550.821