Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01634 ATGGCTCCAGAGGGAAAAGATGAACCCACGCAAAAATTCCCAGAGAGAAACGCGATTCCCCAAGATATCGATGAGAAGAGTTACAGTCTCAACGGAAAAATCATGTTCTCCGCGATCGTTCTTCTCCTCTTCGTCGTCCTTGTAATGCTCTGTCTCCACATCTACGCGCGCTGGTACCTCAGACGCGCGCGCCGCCGCCAGCTACTACGCCAACGTGAGCTCCGTCGCACGCAGCTCGTCTTTTACAATGATGCCGCAACCCCCGCCGCTGTCTCCCGTGGCCTCGACGCCGCCGTCCTTGCCTCGCTCCCCGTCTTCACTTACGACTCCGTGGCCCACCCGGATAACGCGCCGGAATGCGCGGTTTGCTTGTCGGAGTTCAAGGCGGGCGAACCGGGCCGGGTCTTACCGAAGTGTAACCATAGCTTCCACACCGAGTGTATCGACATGTGGTTCCACTCGCACGCCACGTGTCCACTTTGTCGCGCACCGGTCGAGCGCCCGCCCGAACCGGAAGTTGTTATTACGGTACGCGAAGTGGAAATCGGTTCGATTTCCTCGGAGGGTGAGAACCGAACCGGTTCTACCTCTCCTTCTTCCTCCTCGGTTGGCTCGAGGAAATCTTTGGTTGGTGTGACCGTTGAGGTGCCTCCGCGGGAGGGGAATTTTCGGGACGAGGATTCGTCGTCGTTTCGGTCGCCGATGAGTCGCATGTTGTCGTTTACGAGGATTCTGAGCAGAGACCGGAGGGGGAACGTGTCGCCCTCATCATGCGGTGGTGATTGTAGCCCCGGTGCCCAGTGTGACGCGGAGCGAGGTGGGAGAGATGAGACTCAGTGA 840 0.5857 MAPEGKDEPTQKFPERNAIPQDIDEKSYSLNGKIMFSAIVLLLFVVLVMLCLHIYARWYLRRARRRQLLRQRELRRTQLVFYNDAATPAAVSRGLDAAVLASLPVFTYDSVAHPDNAPECAVCLSEFKAGEPGRVLPKCNHSFHTECIDMWFHSHATCPLCRAPVERPPEPEVVITVREVEIGSISSEGENRTGSTSPSSSSVGSRKSLVGVTVEVPPREGNFRDEDSSSFRSPMSRMLSFTRILSRDRRGNVSPSSCGGDCSPGAQCDAERGGRDETQ 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01634 279 Pfam Ring finger domain 119 162 IPR001841 -
Spst6g01634 279 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Spst6g01634 279 SMART ring_2 120 161 IPR001841 -
Spst6g01634 279 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 29 215 - -
Spst6g01634 279 MobiDBLite consensus disorder prediction 184 279 - -
Spst6g01634 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 168 IPR013083 -
Spst6g01634 279 CDD RING-H2_EL5-like 119 162 - -
Spst6g01634 279 MobiDBLite consensus disorder prediction 186 208 - -
Spst6g01634 279 FunFam E3 ubiquitin-protein ligase ATL6 83 168 - -
Spst6g01634 279 MobiDBLite consensus disorder prediction 247 261 - -
Spst6g01634 279 SUPERFAMILY RING/U-box 100 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01634 Spst-Chr6 15587879 15588718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01634 26 276 Rapid Response to Elicitors AT3G16720 48.936 2.68e-66 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01634 - - gmx:100791545 302.753