Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01630 ATGGGTGATTCTAACTTTGCCAGTAACCAACGAAAGTTTGCCATTCTCGGCATATCTTCAATCCTCCTTGTGGCGATGATGGCTTCGGTGGCTGTTTCTTTAAACGATGGAGGTGAAGGTAAAGGAGAAGAAGGGCCTCATATCGCTAGTACTGAAAGGAACAGTATAGACATGCTTTGTCGATCAACAGAATACACGGACACCTGCAAGAAAAGTCTTGTAAATGCGTCTAACGGAGCCACAGACACAAAGTCTCTGGTGAAAGCTGCGATCAATGCCACAGCGGTGGAGCTTTTGAGTCACATAAGGAACTCGTCCCTTTATCGTGATTTGGGGAAGGACAACATGACAAGACAAGCCTTGGAGATTTGTAAGGAAGTGTTTCAGTATGCTGTTGCTGGTATTCATAAATCTGCTGAGACATTAGACAGGCTTGACTACAGCAAGTTGGGTGAATTTGTTTATGACATGAAGGTTTGGATCGCGGGGAGTCTTTCTCATCAACAAACGTGCTTGGATGGCTTTGAGAACACAACCACAGAGGCTGGCGCGAAAATGGCAAAGGTTTTGAATACCTCTATGGAGCTTAGTAGCAATGCGTTGGATATGATCAATGTGATCTCTGGTGTACTCAAAGACCTTAACATCAGTTCACTATTTGGCAATAGGAGACTTCTCTCTGAGGACACAACCCTTGTGGATGGCTATCCTTCGTGGGTGAGTGAGGGGAAACGACATCTTCTTGAGGCTGGAAAGGAACATCCCCATGCAGTTGTGGCCCAAGATGGATCTGGCCAATTTAGAACTCTCACTGATGCTCTTAAGACCGTTCCCCCTAACAATGCTAAACCTTTTGTCATTCATGTCAAAGCTGGTGTGTACAAGGAATATGTGGATATGTCCATCTTAATGACCCATGTCACTGTTATTGGAGATGGTCCTCATAAGACTATATTCAGTGGCCATTTAAACTACGTTGATGGTGTCCAAACTTACAAAACTGCTACCTTTGCGGTTAATGCTCCAAACTTCATGGCCAAGGGCATTCGATTTGAAAACACAGCAGGGTCTGAGAAACATCAAGCAGTGGCACTTCGAGTAACAGCAGACCAAGCTGTGTTTCTCAATTGCCACATGGTCGGGAACCAAGACACCCTCTATGTCCAATCCCAACGCCAATTCTACCGTGATTGCACAGTCAGTGGTACCATTGATTTTGTGTTTGGAGATGCCATTGCAATGTTCCAAAACTGCAAGCTAGTTGTGAGAAAACCCTTACCCAGCCAACAGTGCATGGTAACAGCTGGTGGCAGAACCAAAGCTGACAGCCCCAGTGCCCTAGTGTTCCAAAAGTGCCACTTCACAGGAGAACCAGAAGTGTCTAAATTGGATCAAAAGGTAGCATACCTTGGAAGGCCATGGAGGGCATTCTCTAAGGTGGTCATCATGGAGTCTGTAATTGACGACATCTTCTTGCCAGAAGGGTACATGGCATGGATGGGAACTGAATTCATGGACACTTGTATATATTACGAGTTCAACAACACTGGCCCTAATGCTGACACATCTAAGAGAGTTAAATGGCCTGGCGTTAAGACCCTAACAGCAAAGAAAGCAAGTGATTATTATCCTGGCAAATTCTTTGAACTTGCTGCTTCAAAAGAAGGTGGTGATTGGATTGTTCAATCCAAGCACAAGCGCCGGCGTATCGACCCTCCGCCACCACCCGAGGTTGAAGAAGCGGCGGAGGAGAACCTTCGTAGAGAGCGGAAGAAACAAAACCTACTCAAGCTCAAATCGAAGTACGAGAAAGGAATTCTTCATTGGGAATCAATGTCGAACACCATGCATGCACTGCAACAACGCCCCACTGTTCACTGTCGTCAACAACAACAACTAAACTGA 1905 0.4562 MGDSNFASNQRKFAILGISSILLVAMMASVAVSLNDGGEGKGEEGPHIASTERNSIDMLCRSTEYTDTCKKSLVNASNGATDTKSLVKAAINATAVELLSHIRNSSLYRDLGKDNMTRQALEICKEVFQYAVAGIHKSAETLDRLDYSKLGEFVYDMKVWIAGSLSHQQTCLDGFENTTTEAGAKMAKVLNTSMELSSNALDMINVISGVLKDLNISSLFGNRRLLSEDTTLVDGYPSWVSEGKRHLLEAGKEHPHAVVAQDGSGQFRTLTDALKTVPPNNAKPFVIHVKAGVYKEYVDMSILMTHVTVIGDGPHKTIFSGHLNYVDGVQTYKTATFAVNAPNFMAKGIRFENTAGSEKHQAVALRVTADQAVFLNCHMVGNQDTLYVQSQRQFYRDCTVSGTIDFVFGDAIAMFQNCKLVVRKPLPSQQCMVTAGGRTKADSPSALVFQKCHFTGEPEVSKLDQKVAYLGRPWRAFSKVVIMESVIDDIFLPEGYMAWMGTEFMDTCIYYEFNNTGPNADTSKRVKWPGVKTLTAKKASDYYPGKFFELAASKEGGDWIVQSKHKRRRIDPPPPPEVEEAAEENLRRERKKQNLLKLKSKYEKGILHWESMSNTMHALQQRPTVHCRQQQQLN 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01630 634 Coils Coil 579 601 - -
Spst6g01630 634 ProSitePatterns Pectinesterase signature 1. 281 300 IPR018040 -
Spst6g01630 634 Pfam Pectinesterase 257 548 IPR000070 GO:0030599|GO:0042545
Spst6g01630 634 CDD PMEI-like_3 59 209 - -
Spst6g01630 634 Gene3D - 254 568 IPR012334 -
Spst6g01630 634 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Spst6g01630 634 FunFam Pectinesterase 52 208 - -
Spst6g01630 634 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 208 IPR035513 -
Spst6g01630 634 SMART PMEI_2 51 203 IPR006501 GO:0004857
Spst6g01630 634 Pfam Plant invertase/pectin methylesterase inhibitor 55 203 IPR006501 GO:0004857
Spst6g01630 634 PANTHER PECTINESTERASE 20 561 - -
Spst6g01630 634 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 207 IPR035513 -
Spst6g01630 634 NCBIfam pectinesterase inhibitor domain 51 207 IPR006501 GO:0004857
Spst6g01630 634 SUPERFAMILY Pectin lyase-like 255 548 IPR011050 -
Spst6g01630 634 MobiDBLite consensus disorder prediction 565 586 - -
Spst6g01630 634 FunFam Pectinesterase 4 253 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01630 Spst-Chr6 15558220 15561766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01630 10 560 Carbohydrate Esterase AT5G49180 44.050 7.71e-166 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01630 K01051 - gmx:100784682 804.283