Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01619 ATGTGTGGAGGTGCTATTATTTCAGACTTCATTGGTGTCAAGCGTGACCGCAAACTCGCCGCGCAGCAACTATGGTCCGAGCTTGACCCTTTCTCTGACTTCCTCGGCTTCGACTCCTCCGCCACCACTGCTACTTCCAAAAGCCAACCACCCCTCCCCGTAATTTCAGACAAAAAAGTGGAATCATGTGAGAAGAAGAAAAGTGTGGGTGCAGGGAAGAAGAGTGAGCGTGCTCGCAAGAACGTGTACAGAGGAATCAGGCAAAGGCCATGGGGGAAATGGGCCGCAGAAATAAGGGACCCACACAAGGGTGTCCGCGTCTGGCTCGGCACCTTCCCCACCGCCGAGGAAGCCGCCAGAGCCTATGACGCCGCCGCCAAACGCATCCGCGGTGACAAGGCCAAACTCAACTTCCCCAGCGGCACTCCGCCACCCTCCAAGAAGCGCTGCCTCAGCCCCGACCTCCCCCAACAAAGCAGTTCAGCTTCCACCGGACCACTGCTTTCCGTGGCCGCCCACAGCAGCGACAGCAGCGTAGGAGAGGAACTCGATCTGAAACAAATTGAACTGTTTCTTGGCTTAGAGAATGAGCAACCTCTGCCCAACGGTGTTGAATGGGACAACGGTTACATTATGGATGACTTATGGATGCTCGACGACGTCGTTGTGTCCGACCATTCTAATGTTCATCCATCACGAGCAGGGTTGGAATTTTGTGCATGGAGTGAAGAATTAAAAAGGGAAATGGCAGTTGACAAATGA 762 0.5407 MCGGAIISDFIGVKRDRKLAAQQLWSELDPFSDFLGFDSSATTATSKSQPPLPVISDKKVESCEKKKSVGAGKKSERARKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFPTAEEAARAYDAAAKRIRGDKAKLNFPSGTPPPSKKRCLSPDLPQQSSSASTGPLLSVAAHSSDSSVGEELDLKQIELFLGLENEQPLPNGVEWDNGYIMDDLWMLDDVVVSDHSNVHPSRAGLEFCAWSEELKREMAVDK 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01619 253 CDD AP2 83 139 IPR001471 GO:0003700|GO:0006355
Spst6g01619 253 PANTHER DNA-BINDING DOMAIN 53 172 IPR044808 GO:0003700|GO:0009873
Spst6g01619 253 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Spst6g01619 253 Pfam AP2 domain 82 131 IPR001471 GO:0003700|GO:0006355
Spst6g01619 253 SUPERFAMILY DNA-binding domain 82 139 IPR016177 GO:0003677
Spst6g01619 253 MobiDBLite consensus disorder prediction 133 169 - -
Spst6g01619 253 MobiDBLite consensus disorder prediction 152 169 - -
Spst6g01619 253 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Spst6g01619 253 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Spst6g01619 253 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Spst6g01619 253 Gene3D AP2/ERF domain 82 140 IPR036955 GO:0003700|GO:0006355
Spst6g01619 253 FunFam Ethylene-responsive transcription factor 2 81 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01619 Spst-Chr6 15443771 15446259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01619 1 224 AP2-EREBP Transcription Factor Family AT3G16770 47.308 1.12e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst6g01619 AP2 2.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01619 K09286 - gmx:100817253 279.641