Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01602 ATGAATCTCGGCAACGGCAAGGGATCCACTTCCAGTTCTCCTCTGAAAACCGGCGACGCCGTCTCCGACCAGTTTCCGGCGGGTCTCCGCGTGCTGGTGGTGGATGATGACCCCACTTGCCTTATGATCCTTGAGAGGATGCTGCGTGCGTGTCTCTATGAAGTGACGAAATGCAAGCGGGCTGAGGTTGCATTGTCACTTCTGAGAGAGAACAAAAACGGGTTTGATATTGTTTTAAGCGATGTGCATATGCCAGATATGGATGGATTTAAGCTTTTGGAGCATATTGGGTTGGAGATGGACCTTCCGGTTATTATGATGTCAGCTGATGATGGAAAAAGTGTTGTGATGAAAGGGGTGACGCACGGTGCGTGTGATTATCTGATTAAACCTGTGCGAATTGAGGCTTTGAAGAACATATGGCAGCATGTTATTCGGAAGAGAAAGAATGGGTTGAAAGATGTGGAGCAATCGGGTAGTGTTGAAGAAGGAGATCGGCTTCTAAAGGGATGTGATGATGGAGATTACTCGTCTTCAGTGAATGAAAACAAAACCTCCAAGAAGAGGAGGGATGAGGAGGAGGAAGGAGATGAGAGGGATGATTCCTCCACGTTGAAGAAGCCGCGAGTTGTTTGGTCTGTTGAGCTTCATCAGCAGTTTATGGCTGCTGTGAATCAACTTGGAATTGATAAGGCGGTTCCTAAAAAGATTTTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCTAGCCACCTCCAGAAATACCGTTTGTATCTTCGAAGACTGAGTGGAGTTTCACAGCAGCAGGGTAACTTGAACAACTCCTTCATCAGCTCACAAGATGCAACATTTGGGGCAACCTCAATCACTGGAATTGATCTTCAAACTCTTTCAGTTGCTGGCCAGCTTCCGGCACAAAGTCTGGCCAAGCTTCAAGCCGCAGGACTTGGCAGGACAACTGCTAAAGCTGGTGTGTCTATGCCTCTATCTGATCAACAGAACCTTTTTAGTTTTGAGAACCCACGATTAAGATTTGCAGAAAGGTCACTACATCATTTAAGCAACAGTAAACCAATAAACTTGCTTCATGGAATTCCTACCAACATGGAGCCAAAACAACTTATCAATTTGCACCAATCTACCCAAACCCTTGGTAACTTGAACATGCGAGTCAATGCTCCTGCTGCGCAGAACAACCCCTTGTTGATGCAGATGGCGCAGTCTCAACCAAGAGCTCAGATGCGAAGTGAAAATGCTGATTCTCATGTAACCAGGTTTCCATCATCTTTGGTGCAGCCTATAGTACCAAATGATATTTCTAATGGTGTTTTGGGAAATGGGATTACTGGAACCAGCAACATAACCACTGCTTATAATACAGTTTCACAAAACTCTTCATTGTTGAGTTTTCCTATGAACCAAACCAATGAAATGTCTGTTAGTAGTTTTCCTCGTAGAAGCACTCCAAGTCTAACTAGTATCCCAACTAAAGGCATGTTTCATGAAGAAGGTACCTCTGATATTAAAGGACCTGGTGGATTTGTTCCAAGTTATGATATGTTTAATGAACTCCACCATCAAAAGTCCCATGATTGGGACTTAACAAACACAGGCATAACATATGATTCTTCTCAGCATGCAAATCCTTTACAAGGCAACATTGATGTCTCACCATCAGTTTTAGTCCATCAGGGTTTTCCCTCTATGCAACAGTCTGTACGAACTAGAGATACTACTTCAATTGGAAAAGCTATGTTCTCCACAGGGGAAGGCATACAAGGTAATCTCCAAAATGTTGGTCAACACCTCAATAACCCTGTTGACAATTCCGTAAGGGTTAAGGCTGAAAGATTTCCTGATCCAAGCTCTCAGATTAATAACCTTTTCTCTGATCAGTATGGTCATGAGGATCTTGTCACTGCATTTCTGAAACAGCAAGAAGGAGTTGGACCGTCTGATAACGAGTTAGACTTTGATGGATATTCCTTAGATAACATTCCGGTTTAG 2016 0.4355 MNLGNGKGSTSSSPLKTGDAVSDQFPAGLRVLVVDDDPTCLMILERMLRACLYEVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVIRKRKNGLKDVEQSGSVEEGDRLLKGCDDGDYSSSVNENKTSKKRRDEEEEGDERDDSSTLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQGNLNNSFISSQDATFGATSITGIDLQTLSVAGQLPAQSLAKLQAAGLGRTTAKAGVSMPLSDQQNLFSFENPRLRFAERSLHHLSNSKPINLLHGIPTNMEPKQLINLHQSTQTLGNLNMRVNAPAAQNNPLLMQMAQSQPRAQMRSENADSHVTRFPSSLVQPIVPNDISNGVLGNGITGTSNITTAYNTVSQNSSLLSFPMNQTNEMSVSSFPRRSTPSLTSIPTKGMFHEEGTSDIKGPGGFVPSYDMFNELHHQKSHDWDLTNTGITYDSSQHANPLQGNIDVSPSVLVHQGFPSMQQSVRTRDTTSIGKAMFSTGEGIQGNLQNVGQHLNNPVDNSVRVKAERFPDPSSQINNLFSDQYGHEDLVTAFLKQQEGVGPSDNELDFDGYSLDNIPV 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01602 671 MobiDBLite consensus disorder prediction 152 172 - -
Spst6g01602 671 MobiDBLite consensus disorder prediction 152 204 - -
Spst6g01602 671 MobiDBLite consensus disorder prediction 481 498 - -
Spst6g01602 671 SMART REC_2 29 141 IPR001789 GO:0000160
Spst6g01602 671 ProSiteProfiles Response regulatory domain profile. 30 145 IPR001789 GO:0000160
Spst6g01602 671 PIRSF RR_ARR_type-B 6 663 IPR017053 GO:0003677|GO:0003700|GO:0009736
Spst6g01602 671 MobiDBLite consensus disorder prediction 481 511 - -
Spst6g01602 671 Gene3D - 204 266 - -
Spst6g01602 671 MobiDBLite consensus disorder prediction 182 204 - -
Spst6g01602 671 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 328 IPR045279 GO:0009736
Spst6g01602 671 Pfam Response regulator receiver domain 31 139 IPR001789 GO:0000160
Spst6g01602 671 CDD REC_typeB_ARR-like 31 145 - -
Spst6g01602 671 SUPERFAMILY Homeodomain-like 204 264 IPR009057 -
Spst6g01602 671 FunFam Two-component response regulator 203 266 - -
Spst6g01602 671 FunFam Two-component response regulator 29 166 - -
Spst6g01602 671 NCBIfam myb-like DNA-binding domain, SHAQKYF class 207 260 IPR006447 GO:0003677
Spst6g01602 671 Pfam Myb-like DNA-binding domain 209 259 IPR001005 -
Spst6g01602 671 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 263 IPR017930 -
Spst6g01602 671 SUPERFAMILY CheY-like 28 149 IPR011006 -
Spst6g01602 671 Gene3D - 29 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01602 Spst-Chr6 15198927 15202217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01602 63 671 Response Regulator Gene Family AT3G16857 49.008 1.81e-171 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Spst6g01602 Response_reg 1.7e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01602 - K14491 gmx:100809583 1148.27