Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01601 ATGACCAGAGAGGAAGAGTTCCTACCCCGTCAGAAGGGTGACCTAAGCATCACATACGACATCATCAGAACCTACAATTCCAATTACTGGGCAGAGGTTACAATCGCAAACCACAACCCTTTAGGCCGTCTTGACAACTGGAGACTGAGTTGGGACTGGCAAAACGACGAGTTTATCTACACAACAAAGGGTGCATATCCATTAAAGGTGGATTCCTCTGACTGTGTTTTCGGTTCTCAAGGTGTTTTCTACAAGGAACTTGACTTTGCTAACGTGTTGAACTGTGAAAGAAGGCCAACCATAGTGGATCTTCCTCCCTCAATGTTCAATGATTCAGACCTTGGTCAAATCCCATTTTGCTGCAGGAATGGCACTATCTTGCCACCAACAATGGATCCTAGCATGTCAGCTTCAAGGTTTCAAATGCAAGTGTACAAAATGCCACCCAACCTTAACCGTTCCACACTCACACCACCTAATAACTGGGAGATAAAGGGTATCCTTAACCCTGACTACGAATGTGGCAACCCTATTAGGATTAGTCCCAGTGAATCCCCCGACCCTAGACACATTCCATCAAACAAATCATCAATTGCAAGTTGGCAAGTGGTGTGCAACATCACAAACACAAAACGTGAAACACGCAAGTGCTGTGTTTCCTTTTCAGCTTTTTACAATGAATCGGTTATTCCATGCAACACGTGTGCATGTGGATGTCCAAGTAACTCGGAGAGAACATGCAGTGCAACTTCACCAGCCATGTTGCTTCGACCAGAGGCACTTCTCGTCCCTTTTGATAATCGAACTAAGATGGCCGTTTCTTGGGCTGAGATAAACCATTTACCTGTGCCTAATCCAATGCCTTGCGGTGATAACTGTGGTGTGAGCATAAACTGGCACGTGGCTACGGATTACCGCAAAGGTTGGAGCGCGCGGGTGACACTTTTCAACTGGGGTGAGACTAGTTTTGCTGACTGGTTTGCTGCAGTGCACATGAACAAAGCGGCAAAGGGGTTTGAGGAAGTGTACTCGTTCAATGGAAGCGTTTTGGAGAGTGTGGAAAACACGATATTCATGCAAGGGAAGAAGGGGTTGAATTTTCTTGTCGCGGAAACGGATGGATCTAACCCTCGGAAAGATCCTAGGGTGCCGGGGAAACAGCAATCAGTGATCTCGTTTACGAAGAAGGAGACTCCTGGAATCAATGTGGTTGGCGGTGATGGGTTTCCAAGTAAAGTGTTCTTCAATGGGGAGGAATGCTCTCTTCCTTCGGTGTTACCAAGCAGTGGTACGAGAAAGGAGGTCTCATTGGCTGTCTTCTTGTTAGTGATGTTGCTGTCGATCATCTTCATGTGCCATTAG 1362 0.4648 MTREEEFLPRQKGDLSITYDIIRTYNSNYWAEVTIANHNPLGRLDNWRLSWDWQNDEFIYTTKGAYPLKVDSSDCVFGSQGVFYKELDFANVLNCERRPTIVDLPPSMFNDSDLGQIPFCCRNGTILPPTMDPSMSASRFQMQVYKMPPNLNRSTLTPPNNWEIKGILNPDYECGNPIRISPSESPDPRHIPSNKSSIASWQVVCNITNTKRETRKCCVSFSAFYNESVIPCNTCACGCPSNSERTCSATSPAMLLRPEALLVPFDNRTKMAVSWAEINHLPVPNPMPCGDNCGVSINWHVATDYRKGWSARVTLFNWGETSFADWFAAVHMNKAAKGFEEVYSFNGSVLESVENTIFMQGKKGLNFLVAETDGSNPRKDPRVPGKQQSVISFTKKETPGINVVGGDGFPSKVFFNGEECSLPSVLPSSGTRKEVSLAVFLLVMLLSIIFMCH 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01601 453 PIRSF COBRA 8 453 IPR006918 GO:0010215|GO:0016020
Spst6g01601 453 PANTHER COBRA-LIKE PROTEIN 7 3 451 - -
Spst6g01601 453 Pfam COBRA-like protein 29 208 IPR006918 GO:0010215|GO:0016020
Spst6g01601 453 SUPERFAMILY Carbohydrate-binding domain 11 60 IPR008965 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01601 Spst-Chr6 15196271 15197632 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01601 4 440 COBRA Gene Family AT4G16120 66.591 0.0 641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01601 - - vum:124836920 846.654