Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01598 ATGTCGTTGAGGCCAAATGCTAGAACCGAGGTCCGTCGCAACCGTTACAAGGTGGCGGTGGACGCCGATGAGGGTCGGAGGAGGAGGGAGGATAACATGGTGGAGATCCGTAAGAGTAAGCGTGAAGAGAGCCTCCAGAAGAAGCGCCGTGAAGGCCTTCAAGCTCAGCAACAGTTCCCCACTCCTCTTCAAACCAACTCCATTGTCGAGAAGAAGTTAGAGAGCCTTCCTGCGATGGTTGCTGGAGTATGGTCAGAAGATAACAACCAGCAATTGGAAGCAACCACGCAGTTTCGAAAACTGCTTTCAATTGAGCGCAGCCCTCCTATTGAGGAAGTTATTCAAGCTGGAGTTGTGCCTCGATTTGTGGAATTTCTTGTTAGGGAGGATTTCCCTCAACTTCAGTTTGAGGCCGCATGGGCTCTCACAAACATAGCATCTGGAACTTCTGAGAATACCAAGGTGGTGATTGATCATGGGGCAGTTCCCATATTTGTCAAGCTGCTTAGTTCGCCCAGTGATGATGTTCGGGAGCAGGCAGTGTGGGCGTTGGGAAATGTTGCTGGTGACTCCCCCAGGTGCCGTGATCTTGTTCTTGGCCATGGGGCCTTAACCCCTCTGTTGGCCCAGTTGAACGAGCATGCAAAACTTTCAATGTTGAGAAATGCAACATGGACCCTGTCAAACTTCTGCAGGGGCAAACCACAGCCTCCATTTGAGCAGGTCAGAGCAGCACTTCCAGCTCTAGAGCGATTGGTATTTTCCAATGATGAAGAGGTCTTAACAGACGCTTGCTGGGCGCTATCATATCTTTCGGATGGAACAAATGACAAAATTCAAGCTGTTATTGAGGCTGGTGTATGTAGCAGACTGGTGCAGCTCCTTATGCACCCATCCCCTTCAGTGCTGATTCCTGCACTTCGCACAGTGGGAAATATTGTAACAGGAGATGATATTCAGACTCAGACTATCATTAATCATGGGGCACTCCCATGCCTTTTGAGCCTATTGGCACATAATCATAAGAAAAGCATCAAGAAAGAAGCATGCTGGACCATATCGAACATTACAGCTGGAAACAGAGAACAGATACAGGCTGTTATTGAAGCTGGTCTGATTGCCCCCCTTGTCAATCTTCTTCAAAATGCCGAGTTTGACATTAAAAAGGAAGCGGCTTGGGCAATCTCAAACGCCACATCTGGTGGTACCCATGAGCAGATCAAGTATTTGGTGAGCCAGGGTTGCATTAAACCTCTCTGCGATCTGCTTATTTGCCCCGACCCAAGAATTGTCACGGTGTGTTTAGAAGGTCTTGAGAACATTCTGAAGGTTGGGGAAGCTGAGAAGAGCTTGGGTAACACTGGAGATGTCAACTTGTATGCTCAGATGATAGATGATGCAGAAGGATTGGAGAGAATTGAAAACCTGCAGAGTCATGACAACAACGAAATATATGAAAAGGCAGTTAAGATTCTTGAAACTTACTGGTTGGAAGACGAAGATGACACACTACCTACAGGCGATGGTGCTCAACCTGTTGAAGACTTTTGTTTGGGTAAAACGAACCGGGTTGGAAGGAGCAGGGTTGATGCTAGGGTAACTGTTGGAGTCGAGTCTGGGGTGGGGTTGGGGGGTGAGTTCGGTCAGTTTGGTCCCTTGCACTTGATGGTGTCTGGTTTAAGTCTGGTCTTGTGTCCGTGGTTAATGAAGTGCAAGGGTGGGTCAGTTTAA 1731 0.4806 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFPTPLQTNSIVEKKLESLPAMVAGVWSEDNNQQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALTPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVQLLMHPSPSVLIPALRTVGNIVTGDDIQTQTIINHGALPCLLSLLAHNHKKSIKKEACWTISNITAGNREQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNLYAQMIDDAEGLERIENLQSHDNNEIYEKAVKILETYWLEDEDDTLPTGDGAQPVEDFCLGKTNRVGRSRVDARVTVGVESGVGLGGEFGQFGPLHLMVSGLSLVLCPWLMKCKGGSV 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01598 576 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 371 399 IPR000225 GO:0005515
Spst6g01598 576 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 328 371 IPR000225 GO:0005515
Spst6g01598 576 FunFam Importin subunit alpha 74 497 - -
Spst6g01598 576 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Spst6g01598 576 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Spst6g01598 576 MobiDBLite consensus disorder prediction 23 50 - -
Spst6g01598 576 Gene3D - 11 50 IPR036975 GO:0006606
Spst6g01598 576 PANTHER IMPORTIN ALPHA 12 500 - -
Spst6g01598 576 PIRSF Importin_alpha 2 523 IPR024931 GO:0005737|GO:0006606|GO:0061608
Spst6g01598 576 Gene3D - 74 497 IPR011989 -
Spst6g01598 576 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Spst6g01598 576 SMART arm_5 149 189 IPR000225 GO:0005515
Spst6g01598 576 SMART arm_5 190 232 IPR000225 GO:0005515
Spst6g01598 576 SMART arm_5 275 315 IPR000225 GO:0005515
Spst6g01598 576 SMART arm_5 360 400 IPR000225 GO:0005515
Spst6g01598 576 SMART arm_5 234 273 IPR000225 GO:0005515
Spst6g01598 576 SMART arm_5 403 443 IPR000225 GO:0005515
Spst6g01598 576 SMART arm_5 317 358 IPR000225 GO:0005515
Spst6g01598 576 SMART arm_5 106 147 IPR000225 GO:0005515
Spst6g01598 576 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Spst6g01598 576 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Spst6g01598 576 Pfam Armadillo/beta-catenin-like repeat 242 272 IPR000225 GO:0005515
Spst6g01598 576 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Spst6g01598 576 Pfam Armadillo/beta-catenin-like repeat 320 358 IPR000225 GO:0005515
Spst6g01598 576 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Spst6g01598 576 Pfam Armadillo/beta-catenin-like repeat 276 314 IPR000225 GO:0005515
Spst6g01598 576 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Spst6g01598 576 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Spst6g01598 576 Pfam Atypical Arm repeat 458 502 IPR032413 -
Spst6g01598 576 FunFam Importin subunit alpha 11 50 - -
Spst6g01598 576 SUPERFAMILY ARM repeat 6 502 IPR016024 -
Spst6g01598 576 MobiDBLite consensus disorder prediction 23 56 - -
Spst6g01598 576 Pfam Importin beta binding domain 12 96 IPR002652 GO:0006606|GO:0061608
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01598 Spst-Chr6 15177300 15182134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01598 132 392 U-box Gene Family AT3G46510 24.521 8.56e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01598 K15042 - gmx:100808498 992.26