Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01588 ATGGGAGTAAATAGGAAGACTGTTGTCGGTGATGCAATTGTTGGTTTTTTGGTGAGAGAAGAAGCTGTTGGGTGGCAAAATTTGTCCTTGGTTTCTTTTGTTGTAATGGCAAACAACTTAACGGGGCAGCTTGTGGCTTCAGAGATACATGGGTTTCACACGTTGCAGGATCTGGATGTTAGTGATACTATGGAGGAGGCAAAAAGCAGATGGCTGCGTCCCAATGAGATTCATGCCATACTCTGTAATCATAAATATTTCAAGATCAATGCCAAGCCAGTGCATTTGCCCGAAAGTGGTACTATTGTACTATTTGACCGCAAGATGCTTAGAAACTTCAGAAAAGATGGGCACAATTGGAAAAAGAAAAGTGATGGGAAAACTGTTAAAGAAGCCCATGAACACTTAAAAGGGGTTTTAATGGTTTCTTCTTTGTTGGCAATGAAGAAAGGATCCATGTATACTATGCTCATGGCCAAGATAACCCAACCTTTGTTCGTAGATGTTATTGGTTGCTTGATAAGTATGTTTTGCATGACTTTAGGTTCTGAATTCCAATATATCATGAGTTTGGAGCACATAGTCCTTGTTCATTATCGTGAAACACGAGAGATACAATTGCAAAGTTCTCCTGTTACACCTATAAATTCAAATTCAAGTTCTGTCTCTGATCCAGCTGCATCTTGGATTCCACCAGAAGAGTTTGATTCTGGGACGAACAGTGCTTACACTGTTGAGCTTAATGACAACGTAACAGTCAAAAATCATGAACAGAAGCTTCATGAAATTAATACACTTGAATGGGATGACCTAGTGGTTTCAAATGTCCACACTTCTACTACACCTAATGGAGGCAATGCTCCATGTTCATATCAGCAAAATCAAAGTTTACTGACTGGAAGCTTTGGCAATGTATCCAGTAATCCTTCAGCAGAAATTCCTTCTTTTGGCTTGCAAAGTCAGGACAGCTTTGGGATGTGGGTGAACAACATATCCGATACTGAGTGTCCAATAAATGAATCGGCTCTTGAAACATCAATTTCTTCTGTTCATGAACCATATTCATCGCTGGTGGCAGATGATCAGTTATCTTCCCTGCCTGAACTAGTATTTAATCTCACAGAGGTGTCTCCTGCGTGGGCGTCTTCCACTGAGAAAACAAAGGTCCTGGTAACCGGATATTTTCATAGTAACTATCAACACCTTGCAAAGTTCAACCTAGTGTGTGTCTGCGGTGATGTTAGTTTTCCTGTAGAAATTGTTCAAGTTGGGGTTTACCGATGCTGGGTATCACCACATTCACCTGGATTGGTCAATATCTATCTGAGCTTTGATGGCCATAAGCCTATTAGCCAAGTTGTTAATTTTGAGTATCGTACTCCCATTTTGCATGATCCAACTGCTTCAATGGAAGAGAAATACAACTGGAATGAATTGCGACTTCAGATGAGGCTTGCTCATTTGCTCTTTTCTTCAGACAAGACCCTTGATATTTTCTCAAGTAAAGTATCACCAACTGCACTCAAAGAGGCTAGAAGATTTTCCTCCAAAACATCATTTATCTCCAAAAGCTGGCAATTCTTGATGAAGTTAATTGACGACAAAACAACTCCATTTTCACAAATAAAAGATAACTTGTTTGAAATTGCATTGAAAAACAAATTAAAGGAATGGCTTTTGGAACGAATTATCTTAGGCAGCAAGAGTACTAAATATGATGCGCAAGGACAAGGAGTAATTCATTTGTGTGCAATGCTGGGATATAATTGGGCAATCTCCTTATTTTCTTGGTCAGGCTTGTCGTTAGATTTCCGTGACAAATTTGGATGGACAGCTCTTCATTGTGCAGCTTATCATGGAATGGAGAAAATGGTTGCAACTCTGCTGTCTTGTGGGGCAAGGCCAAACGTGGTCACAGATCCAACTCCACAAAATCCTGGTGGATGTACTGCTGCTGATCTTTCTTATATGAAAGGATACGATGGCTTAGCTGCTTACCTTTCTGAAAAGTCTCTGGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAACATCACTGGCACACTGGAAACTGGCTCAACTGACCCAGTAAATCCTGAGAACCTTACTGAGGACCAGCTGTACCTAAAGGAGACATTGGCAGCTTACCGTACAGCTGCTGGGGCAGCAGCACGCATTCAAGCTGCCTATAGGGAACATTCGCTAAAATTACGATATGAGGCAGTTGAATTAACCAGCCCAGAGGATCAAGCACGTCATATAGTAGCAGCTATGAGGATCCAACATGCCTTTCGCAACTATGAGACAAGGAAAACGATGGCAGCCGCCGCTCGGATTCAGCATAGATTCCGTACGTGGAAATACCGTAGAGAATTTCTTCACATGCGGCGTCAAGCTATTAAAATTCAAGCTGCTTTCAGGGGCTTTCAAGTCCGGAGGCAATATCGTAAAATCATATGGTCTGTTGGGGTGCTGGAGAAAGCAATTCTGCGGTGGCGGTTAAAGAGAAAAGGCTTCCGGGGTCTCCAGGTTAATCCTGTTGAGGATGAGAAGCAGGAAAATGGTGCAGAGGAGGATTTCTTTAGGACCAGCAGGAAACAAGCTGAAGAACGTGTGGAGAGGTCTGTCGTTCGTGTGCAGGCCATGTTCCGTTCTAAGCAAGCACAAGTAGAATACAGGAGGATGAAGCTAGCACATAATCAAGCAAAGCTGGATCTGGAATTAGAAGATTTCCTCAATTCGGAAGTTGACATGTTACCCAAGATATAG 2769 0.42 MGVNRKTVVGDAIVGFLVREEAVGWQNLSLVSFVVMANNLTGQLVASEIHGFHTLQDLDVSDTMEEAKSRWLRPNEIHAILCNHKYFKINAKPVHLPESGTIVLFDRKMLRNFRKDGHNWKKKSDGKTVKEAHEHLKGVLMVSSLLAMKKGSMYTMLMAKITQPLFVDVIGCLISMFCMTLGSEFQYIMSLEHIVLVHYRETREIQLQSSPVTPINSNSSSVSDPAASWIPPEEFDSGTNSAYTVELNDNVTVKNHEQKLHEINTLEWDDLVVSNVHTSTTPNGGNAPCSYQQNQSLLTGSFGNVSSNPSAEIPSFGLQSQDSFGMWVNNISDTECPINESALETSISSVHEPYSSLVADDQLSSLPELVFNLTEVSPAWASSTEKTKVLVTGYFHSNYQHLAKFNLVCVCGDVSFPVEIVQVGVYRCWVSPHSPGLVNIYLSFDGHKPISQVVNFEYRTPILHDPTASMEEKYNWNELRLQMRLAHLLFSSDKTLDIFSSKVSPTALKEARRFSSKTSFISKSWQFLMKLIDDKTTPFSQIKDNLFEIALKNKLKEWLLERIILGSKSTKYDAQGQGVIHLCAMLGYNWAISLFSWSGLSLDFRDKFGWTALHCAAYHGMEKMVATLLSCGARPNVVTDPTPQNPGGCTAADLSYMKGYDGLAAYLSEKSLVEQFNDMSLAGNITGTLETGSTDPVNPENLTEDQLYLKETLAAYRTAAGAAARIQAAYREHSLKLRYEAVELTSPEDQARHIVAAMRIQHAFRNYETRKTMAAAARIQHRFRTWKYRREFLHMRRQAIKIQAAFRGFQVRRQYRKIIWSVGVLEKAILRWRLKRKGFRGLQVNPVEDEKQENGAEEDFFRTSRKQAEERVERSVVRVQAMFRSKQAQVEYRRMKLAHNQAKLDLELEDFLNSEVDMLPKI 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01588 922 Gene3D Immunoglobulins 368 462 IPR013783 -
Spst6g01588 922 SUPERFAMILY Ankyrin repeat 548 670 IPR036770 -
Spst6g01588 922 SMART ANK_2a 608 637 IPR002110 GO:0005515
Spst6g01588 922 Pfam Ankyrin repeats (3 copies) 550 637 IPR002110 GO:0005515
Spst6g01588 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 719 822 IPR027417 -
Spst6g01588 922 ProSiteProfiles Ankyrin repeat region circular profile. 608 637 - -
Spst6g01588 922 ProSiteProfiles IQ motif profile. 753 782 IPR000048 GO:0005515
Spst6g01588 922 FunFam Calmodulin-binding transcription activator 2 771 819 - -
Spst6g01588 922 ProSiteProfiles IQ motif profile. 772 801 IPR000048 GO:0005515
Spst6g01588 922 Pfam CG-1 domain 66 137 IPR005559 GO:0003677
Spst6g01588 922 SMART CG_1_2 64 203 IPR005559 GO:0003677
Spst6g01588 922 FunFam Calmodulin-binding transcription activator 5 367 463 - -
Spst6g01588 922 Gene3D - 534 677 IPR036770 -
Spst6g01588 922 Gene3D - 771 819 - -
Spst6g01588 922 ProSiteProfiles IQ motif profile. 873 901 IPR000048 GO:0005515
Spst6g01588 922 ProSiteProfiles Ankyrin repeat profile. 608 640 IPR002110 GO:0005515
Spst6g01588 922 ProSiteProfiles IQ motif profile. 795 819 IPR000048 GO:0005515
Spst6g01588 922 ProSiteProfiles CG-1 DNA-binding domain profile. 60 208 IPR005559 GO:0003677
Spst6g01588 922 SMART iq_5 718 740 IPR000048 GO:0005515
Spst6g01588 922 SMART iq_5 794 816 IPR000048 GO:0005515
Spst6g01588 922 SMART iq_5 871 893 IPR000048 GO:0005515
Spst6g01588 922 SMART iq_5 771 793 IPR000048 GO:0005515
Spst6g01588 922 Pfam IQ calmodulin-binding motif 797 816 IPR000048 GO:0005515
Spst6g01588 922 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 59 900 - -
Spst6g01588 922 SUPERFAMILY E set domains 372 459 IPR014756 -
Spst6g01588 922 FunFam calmodulin-binding transcription activator 5 538 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01588 Spst-Chr6 15012989 15027226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01588 64 911 CAMTA Transcription Factor Family AT3G16940 52.381 0.0 844
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Spst6g01588 Ank_2 8.3e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01588 K21596 - gmx:100819198 1364.36