Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01525 ATGGCGGAGGAGAAAAGAGAGGAAGAACCACACCCCAACAACTCACCATCCACCACCATGGCATTCTCCGACGAGATTCCCAACAACTTCACTTTCCCTTTCCAACCACCCACAATCTTCGACGTCATGCCGCCGCCGCCGCGCTTGTCGTCTTCCTCCTGCGACCACAAGGACTCGCCGTTCGGCTTCATGGAGCTGCTCGGCGTCCACGACTACACCGCGCCGTTATTCGATTGGCTCCCCGCCGATGCGCCGTCGCCGGCGAGCTCCAACGTGCCGGACTCCTCTGAGGTGCTGAACGCTCCCGCGTCGCCCAACTTGTCGTCGATTTCGTCGTCTTCGAATGAGGCCACCGTCATCACCACCGCAACCGCTACCGAGGAGCGGAGTGGTAAAGGTGGGATTGAACACGACGAAGTGGAAGCAGAGGAGGAAGAAGAAGGTGGTAATGGAGGCAGGGATGACCCGGATCAAGATAAGACTAAGAAACAGTTGAAACCGAAGAAGAAGAACCAAAAGAAGCAAAGAGAACCGAGATTTGCGTTCATGACAAAGAGCGAGGTTGATCACCTGGACGATGGTTATAAGTGGCGCAAGTACGGCCAAAAAGCTGTGAAAAACAGCCCTTATCCCAGGAGCTACTACCGTTGCACCACCGCTGGCTGCGGCGTCAAGAAGCGCGTGGAGCGTTCCTCCGATGACCCTTCCATCGTCGTTACCACTTACGAGGGGCAGCACACGCACCCTTGCCCTGCTTCGTCGCGGGCTAGCTTCGGGTTCGTGCACGAACCTGGTGGGTTCGGACATGCCCGTTCCTTCGGCTCCTCACACTTCTCTCTCCCACATCAGCACCACCACCAAGCACAAGCTTCGGCTTTGATGTATAACTCCGCCCCTCCTTTTGTTAACTCCGCTAGTAACTTCATGAACACGACGTCGTTTGGTGGGTTTCCTCAGGACCACGCGAACCGTCGAGGTTTCGGACACGAGGCTTTGTTGAGGGACAATGGGTTGCTTCAGGACATTATTGTGCCATCGCAGGTGAGGAAGGAGGAGAAGGACTGA 1065 0.5624 MAEEKREEEPHPNNSPSTTMAFSDEIPNNFTFPFQPPTIFDVMPPPPRLSSSSCDHKDSPFGFMELLGVHDYTAPLFDWLPADAPSPASSNVPDSSEVLNAPASPNLSSISSSSNEATVITTATATEERSGKGGIEHDEVEAEEEEEGGNGGRDDPDQDKTKKQLKPKKKNQKKQREPRFAFMTKSEVDHLDDGYKWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSIVVTTYEGQHTHPCPASSRASFGFVHEPGGFGHARSFGSSHFSLPHQHHHQAQASALMYNSAPPFVNSASNFMNTTSFGGFPQDHANRRGFGHEALLRDNGLLQDIIVPSQVRKEEKD 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01525 354 FunFam WRKY transcription factor 57 177 251 - -
Spst6g01525 354 MobiDBLite consensus disorder prediction 88 128 - -
Spst6g01525 354 MobiDBLite consensus disorder prediction 85 180 - -
Spst6g01525 354 SMART WRKY_cls 191 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst6g01525 354 Pfam WRKY DNA -binding domain 192 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst6g01525 354 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 97 285 IPR044810 GO:0003700
Spst6g01525 354 MobiDBLite consensus disorder prediction 13 35 - -
Spst6g01525 354 Gene3D WRKY domain 175 252 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst6g01525 354 ProSiteProfiles WRKY domain profile. 186 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst6g01525 354 MobiDBLite consensus disorder prediction 1 56 - -
Spst6g01525 354 SUPERFAMILY WRKY DNA-binding domain 183 251 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01525 Spst-Chr6 14326953 14328851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01525 161 352 WRKY Transcription Factor Family AT2G47260 53.846 2.75e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst6g01525 WRKY 3.8e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01525 - - gmx:100812252 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01525 6 14326953 14328851 Spst6g01525 6 14326953 14328851 ECH
Spst6g01525 6 14326953 14328851 Spst3g02930 3 78931215 78933019 PCT