Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01511 ATGGAGATAAAGCCTGAAAATTCAAGGTTTAGGATCAAATACAGCAGGAGACCTCTAAATGAATCAAAGTTTAGAAAAGGGAGACTAGTGGAAGTCAAAAGGGATGATGAAAGTTGTAAGGGGGCCTGGTTTGTTGCTACTATTGTTGACATAATAGGAAAAGACAGATTTCAAGTAGAATATAGGGACTTGAAAACCAATGGTGGAACCCAGATCTTGAAAGAAGAAATTGATGAACGGTTTGTTAGGCCCTGCCCTCTTGAGGTTCCATTTTCTGGTTCTTTCAAACAGTTCCAAGAAGTTGATGCATGGTATAATGATGGGTGGTGGGAAGCCGTGGTTCTTGAAGCACTAAATGATGCAAAATGTTTGATTTCTTTCATTCACAGTGGTGTCTTGAAAATTGAAAATTCTAGACTAAGGCCTCATCACGACTGGATCGATGGAAAATGGGTCGTTATGCCTTCCAAGAAATCAAGTGAACTATTAAAGGAGTTTGGAGATCCGATGTCTAAAACCAAGAATCTCACTGAAATTAATTTAGTCTTAAAACGCCAAAAGCCTAATGAGAGTTCAAAGAATCCGAGAGATGTAACAGCTAGGACCACGAACACCCAAAGCAAATGTGTGGTACATTTCTCTAAAGGTGCAAAGATAGAAGTCAGAAGTGATGAAGAAGGCTACCAAGGTGCCTGGTACACGGCCATTGTTGTTGACTCTTTGCAGAATGGTAAGTACTTGGTGGAGTATTTGACCCTGAGAACTGATGACTTAACTGAACAACTGAAAGAAGTAGCAAATGCTACAGATATCAGGCCATATCCACCAGATTTCAAACATGTTCACCACTTTGCACTGCGTGAAATGGTTGATGCTTGGTATAATGATGGATGGTGGGTAGGTCAAGTATCTAGTATTCTTCTTAGTTCCAAGTATAAGGTTTACTTTTGGTCTACAAAGGAGGAGCTGGAATTTGAGCATTGTAATCTGAGGCCTCATCAAGAATGGATAAATGGAAAATGGGTGATTGCTTCTTTGGTATGA 1044 0.3985 MEIKPENSRFRIKYSRRPLNESKFRKGRLVEVKRDDESCKGAWFVATIVDIIGKDRFQVEYRDLKTNGGTQILKEEIDERFVRPCPLEVPFSGSFKQFQEVDAWYNDGWWEAVVLEALNDAKCLISFIHSGVLKIENSRLRPHHDWIDGKWVVMPSKKSSELLKEFGDPMSKTKNLTEINLVLKRQKPNESSKNPRDVTARTTNTQSKCVVHFSKGAKIEVRSDEEGYQGAWYTAIVVDSLQNGKYLVEYLTLRTDDLTEQLKEVANATDIRPYPPDFKHVHHFALREMVDAWYNDGWWVGQVSSILLSSKYKVYFWSTKEELEFEHCNLRPHQEWINGKWVIASLV 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01511 347 CDD Tudor_Agenet_AtDUF_rpt2_4 286 332 - -
Spst6g01511 347 Pfam Agenet domain 216 276 IPR008395 -
Spst6g01511 347 Pfam Agenet domain 27 86 IPR008395 -
Spst6g01511 347 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 209 342 - -
Spst6g01511 347 SMART agenet_At_2 211 279 IPR014002 -
Spst6g01511 347 SMART agenet_At_2 282 338 IPR014002 -
Spst6g01511 347 SMART agenet_At_2 93 148 IPR014002 -
Spst6g01511 347 SMART agenet_At_2 22 90 IPR014002 -
Spst6g01511 347 CDD Tudor_Agenet_AtDUF_rpt1_3 213 276 - -
Spst6g01511 347 CDD Tudor_Agenet_AtDUF_rpt1_3 24 86 - -
Spst6g01511 347 Gene3D - 201 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01511 Spst-Chr6 14183927 14185436 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01511 222 347 PHD Transcription Factor Family AT5G58610 25.949 2.72e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01511 - - cam:101492247 447.588