Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01502 ATGGAAGTGAAAGGAAGGGTAAGCACCACAACCACCACAATCCAAAGTGATGATGAGATGGACCTTCGAAGAGGTCCTTGGACCGTCGACGAAGACCTTGCTCTCATCAATTACATTGCCAATAACGGAGAAGGTCGATGGAATTCCCTTGCTCGTTCAGCTGGACTCAAACGAACTGGCAAGAGCTGCAGATTGAGATGGTTGAATTATCTTCGTCCCGATGTTCGACGTGGCAACATCACTCTTGAAGAACAGCTTCTTATTCTCGAGCTCCATGGTCGCTGGGGAAACCGATGGTCTAAAATTGCTCAATATTTGCCTGGAAGAACTGATAATGAGATCAAGAATTATTGGAGAACTCGTGTTCAAAAGCACGCCAAACAACTCAAATGTGACGTGAATAGCAAGCAATTCAAGGATGCCATGCGCTACCTTTGGATGCCGAGGCTGGTGGAGCGCATTCAAGCCGCCGCCGCCACCGCCGCAACAGCTGGTTCTCCAACGGCTTCTGCCAGTGCTACTACAACCATCACCACCACCAACAACAACAATAATACAACATACAACTACGACAACAACCTTAACAGTTTTGAGGCGCATAGTGGGAACATGATGTTGAGTCCAGCAATTATGAACAACAACTTTGGCGGTTCACGAAGTTACACTCCAGAGAATAGTAGCACGGGTGCATCGTCAGACTCGTTTGGGACTCAGGTTTCACCTGTCTCGGAGTTGACTCAGGATTACTACAATAATGTAACGGCTGGTAACAACAACAATAACCCTAATCCTGATTACTACCAACAAGCACATGATCAACTCAGCTTTTTGGACTGCATCACAAGCCCATCAGGGTTGTTCTCTCAGCAGCTGGATTTCCAATCCATGGAACCAAACACCCCGTGGATTCCGACTAATGGGGACACATCCAACGGTTTCTGGAACGTTGAAAACATGTTTCTGTTCCAACAACTCACTGACAACATGTGA 990 0.4687 MEVKGRVSTTTTTIQSDDEMDLRRGPWTVDEDLALINYIANNGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHGRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAAATAATAGSPTASASATTTITTTNNNNNTTYNYDNNLNSFEAHSGNMMLSPAIMNNNFGGSRSYTPENSSTGASSDSFGTQVSPVSELTQDYYNNVTAGNNNNNPNPDYYQQAHDQLSFLDCITSPSGLFSQQLDFQSMEPNTPWIPTNGDTSNGFWNVENMFLFQQLTDNM 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01502 329 SUPERFAMILY Homeodomain-like 21 118 IPR009057 -
Spst6g01502 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 126 IPR017930 -
Spst6g01502 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 75 IPR017930 -
Spst6g01502 329 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 19 197 IPR044676 GO:0003700|GO:0006355|GO:0043565
Spst6g01502 329 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Spst6g01502 329 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Spst6g01502 329 Gene3D - 81 144 - -
Spst6g01502 329 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Spst6g01502 329 MobiDBLite consensus disorder prediction 217 238 - -
Spst6g01502 329 MobiDBLite consensus disorder prediction 162 186 - -
Spst6g01502 329 Gene3D - 21 77 - -
Spst6g01502 329 FunFam MYB transcription factor 81 144 - -
Spst6g01502 329 FunFam Myb transcription factor 24 76 - -
Spst6g01502 329 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Spst6g01502 329 CDD SANT 26 71 IPR001005 -
Spst6g01502 329 SMART sant 23 73 IPR001005 -
Spst6g01502 329 SMART sant 76 124 IPR001005 -
Spst6g01502 329 CDD SANT 92 120 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01502 Spst-Chr6 14144255 14146091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01502 1 316 MYB Transcription Factor Family AT3G06490 52.836 2.04e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst6g01502 Myb_DNA-binding 7.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01502 K09422 - gmx:100305347 506.908