Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01491 ATGGCAACAGCTGAGGCAGCTTCTGCGGGGCTTGGCCCCAGATATGCACCTGATGACCCTACTCTTCCACAACCATGGAAGGGGTTGATTGATGGCAGCACTGGTCTGTTATATTATTGGAATCCTGAAACAAATGTTACCCAATATGAAAAACCTGTCCCCTTAACGTCACCAGCGCCTGTGCCTGTGGCCTCTACGCCGAGCTTGGCACCTATACCTGTGGCTCACACATTGCAGGCTAGTGGAATGGTGCCGCAGCACGGGCAGCAGTTAATGCAAGTGCAATCCTCCCAACAGCAGGTGGGTCAGCTTGCCCAACAGCATGGCCAATCACAGCAACAGAGTCCCCATATGGTGCAGGTCACTCAGCAGAAACAATCTCAGGGTGCTCCGCCTGCACAGCAGCAGAACTCAGTGATGACACAATCAGTGTCCCAGCATGGGTTACATCAAGCAAGGCTACAACCCCAGGGGCAGCAAATGATGCAGCAGCCCCAGGGGCAGCAAATTCATCATCAGATACCGCAACATGCAATCCATCCCCAGCATTTTGGGCAAGGAATGCCTCAGGATCATGGCTCACATAATATACCCCCACAAGTACATCAGTTCACTACCCAAAACATGCATTATATGTCATATCAACAAAACATTCCCAGGCAACCAAACTCTCACCACGTTCAATCAAACACGGTCTCACCCGGGCAACCTAACCCCCAGCAAGTTCAGCATAACATGCATGGTCAACCCTTTGAAAATCAACAAACAGCATTTCCGAAGGTAGAGGAAACGGAGTTTAAAAATGGAAGCCTGGTTGGACTTTCGCCATCCCAGTATCCACAGAGGAGTGCCTTGCCTGTTCAGAATAATCAGAACATTCCAGCTGAAGCAGGTTCTGGTCAAATGCCTAATATAGGTGTCAATGCTGGTCAACCACAGCAATTCAGGACTGCCTTGTCAGGCAGTGTGCATCAGTCACCCTCTGCAATGCCATTGCAGCAGGGTGGATCTGATGTATATTACCAACATGGTCCTAACTTTCATAACCAGATGAGCCCGGGGATGATGCATGGTCATCCATCCAATGTCCATCCTGCTGGCCAAAAAATGAGTCACGATGATAATTTACGAGGTAGAGCAGGAAATGAATATTACTATAATTCTAACAAAGATATGTCAACAATGGGTCGTCGGCAACCAGATATGTCTCAAATACCTGTTCCTAGGAATCAGCAGGATATGCGGGTTGGCAATGCTCCTTTCCAAAATGTAATGCCAAGTGGAAATGGAGGTGGTATTGCTGGGAATTCTATGCCTAGCATGTTTATTCCTCCAATGGGAGGACCTTCACCTCTTTCTACGAACACTTTAATGAGGCCTCCATATATGGGATCTTCTGATGCTAGTGATCTCTCACCAGCTGAAATTTACTGTCAGCAACATGAAATTACAGCAACGGGTGGTGACATTCCGCCTCCTTTCATGACATTTGATGCTACCGGGTTCCCTCCAGAGATATTGAGAGAGATATATTCTGCTGGCTTCTCAAATCCAACACCAATACAGGCTCAAACATGGCCTGTTGCACTGCAAGGTAGAGACATAGTAGCAATTGCCAAAACCGGCTCAGGGAAAACATTGGGTTACTTAATCCCTGCATTCATTCTTCTTAGTCAGCGACATAATAATTCTCTGAATGGCCCTACTGTCTTGGTTTTGGCTCCAACACGTGAACTTGCAACACAGATCCATAATGAGGTCATCAAGTTTGGTCGATCATCACGAGTCTCTTGCACGTGCTTGTATGGTGGAGCACCTAAAGCCCTTCAACTCAAAGAGTTAGATCGGGGTGCAGACATTGTTGTTGCCACACCTGGGCGGCTCAATGATATACTTGACATGAAGAAAATTGAATTTGGGCAAGTTTCACTGCTTGTGCTTGATGAGGCTGACAGAATGCTTGACATGGGTTTTGAGCCTCAAATCCGGAAGATTGTGGATGAGATTCCAGCTCGCAGACAAACTCTCATGTACACTGCAACCTGGCCAAAAGAAGTAAGAAAAATTGCTGGTGAACTTCTTGTTAATCCTGTCCAGGTGAACATTGGAAGTGCAGATGAGCTTGCTGCAAATAAAGCTATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAACAGAGGCGTTTGGAGCAAATCCTCAGAACCCAAGAACGAGGTTCTAAGGTTATAATATTTTGCTCCACAAAGAGGTTATGTGATCAGCTAGCTCGAAATATTGGCCGCACTTTTGGGGCTGCTGCAATTCATGGAGACAAGTCTCAAGCTGATAGAGACTGGGTTTTAAGTCAGTTCCGGACTGGGAAGTCACCAATTCTTGTTGCCACTGATGTTGCAGCTCGTGGGCTTGATATTAAGGATATAAGGGTGGTAATCAATTATGATTTCCCCACTGGAATTGAGGACTATGTGCACCGAATAGGAAGAACTGGAAGAGCAGGTGCTACTGGAGTGTCATATACCTTTTTCTCTGAGCAGGACTGGAAACATGCCGGTGATTTAATTAAAGTTTTGGAAGGTGCAAATCAGCATGTGCTTCCAGAGTTAAGACAGATGGCTTTGCGTGGGCCGTCAAACTTTGGAAAGGAACGAGGTGGAATGAGTCGGTTTGATTCTGGTGGTGGGCGTTGGGAGACTGGTGGTCGTGGTAGCATGAGGGATGGTGGCTTTGGTGGTCGTGGTGGTATGAGGGATGGTGGCTTTGGTGGTCGTGGGGGTGGCATGAGGGATGGTGGCTTTGGGGGCCGTGGCATGAGGGATGGGGGGTTTGGTGGTCGTGGTGGTGGCCTGAGGGATGGAGGGTTTGGTGGACGAGGTGGTGGATTTGGTGGACGTGGTGGCATGAGGGATGGAGCTGGTGGGAGAGGTGATTTCTTTCCTGGTAGGAGCAACAGGGGTAGGGGATCTGGTAGCCTTCGTGGTAGTCATGTTGGTTGGGGTAGGGGTGAACGTGGAATGGATGACCGTGGACAAGGTCGTGGGCGTGGACGATTTGACAACAGAAGGGATGTTTCATACAAAAATAGAGACAGAAGTTATAGTCGTAGCCCAGAAAGGGTCCGAACATGGGATTATAGCAGAAGTAGCAGCCGAAGCCGAAGTAGAAGCAGGAGCAGGAGTTGGAGCAGGGACCGTAGTCGAAGCCGCAGCTGGTCTCGCGGGCGAAGTTACAGTGGCAGTGGCAGTCGTAGCCGCAGTCGCAGTCGCAGCCCCAGTTATGATAGGCGTGATAGGTCAGCTCAACAACTTCCTGATCAAAAAGATCTCAGGGCACAGGAAGTAGGAACTTCTGATCGAAGAATACTTTCCGGGTCTCCTGTTCCTGGTACACAAGGGAAATCCGCTTTGGAAACTGAACAAGGGGAGCGGCAGCATGTTGGTAGCACTGATCCCGGCAATGCAGAAGTTGTAGCAGACCTTAGTCACCAATCAGCTTCTGGTGTTTAG 3507 0.4862 MATAEAASAGLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKPVPLTSPAPVPVASTPSLAPIPVAHTLQASGMVPQHGQQLMQVQSSQQQVGQLAQQHGQSQQQSPHMVQVTQQKQSQGAPPAQQQNSVMTQSVSQHGLHQARLQPQGQQMMQQPQGQQIHHQIPQHAIHPQHFGQGMPQDHGSHNIPPQVHQFTTQNMHYMSYQQNIPRQPNSHHVQSNTVSPGQPNPQQVQHNMHGQPFENQQTAFPKVEETEFKNGSLVGLSPSQYPQRSALPVQNNQNIPAEAGSGQMPNIGVNAGQPQQFRTALSGSVHQSPSAMPLQQGGSDVYYQHGPNFHNQMSPGMMHGHPSNVHPAGQKMSHDDNLRGRAGNEYYYNSNKDMSTMGRRQPDMSQIPVPRNQQDMRVGNAPFQNVMPSGNGGGIAGNSMPSMFIPPMGGPSPLSTNTLMRPPYMGSSDASDLSPAEIYCQQHEITATGGDIPPPFMTFDATGFPPEILREIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLIPAFILLSQRHNNSLNGPTVLVLAPTRELATQIHNEVIKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILDMKKIEFGQVSLLVLDEADRMLDMGFEPQIRKIVDEIPARRQTLMYTATWPKEVRKIAGELLVNPVQVNIGSADELAANKAITQYVEVVPQMEKQRRLEQILRTQERGSKVIIFCSTKRLCDQLARNIGRTFGAAAIHGDKSQADRDWVLSQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQMALRGPSNFGKERGGMSRFDSGGGRWETGGRGSMRDGGFGGRGGMRDGGFGGRGGGMRDGGFGGRGMRDGGFGGRGGGLRDGGFGGRGGGFGGRGGMRDGAGGRGDFFPGRSNRGRGSGSLRGSHVGWGRGERGMDDRGQGRGRGRFDNRRDVSYKNRDRSYSRSPERVRTWDYSRSSSRSRSRSRSRSWSRDRSRSRSWSRGRSYSGSGSRSRSRSRSPSYDRRDRSAQQLPDQKDLRAQEVGTSDRRILSGSPVPGTQGKSALETEQGERQHVGSTDPGNAEVVADLSHQSASGV 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01491 1168 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 526 700 IPR014001 -
Spst6g01491 1168 Pfam DEAD/DEAH box helicase 519 689 IPR011545 GO:0003676|GO:0005524
Spst6g01491 1168 SMART ww_5 21 54 IPR001202 GO:0005515
Spst6g01491 1168 SMART helicmild6 750 834 IPR001650 -
Spst6g01491 1168 CDD SF2_C_DEAD 714 843 - -
Spst6g01491 1168 MobiDBLite consensus disorder prediction 1088 1104 - -
Spst6g01491 1168 Gene3D - 16 55 - -
Spst6g01491 1168 MobiDBLite consensus disorder prediction 1 24 - -
Spst6g01491 1168 MobiDBLite consensus disorder prediction 86 173 - -
Spst6g01491 1168 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 468 873 - -
Spst6g01491 1168 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 646 654 IPR000629 -
Spst6g01491 1168 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 566 849 IPR027417 -
Spst6g01491 1168 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 729 873 IPR001650 -
Spst6g01491 1168 MobiDBLite consensus disorder prediction 1000 1071 - -
Spst6g01491 1168 FunFam probable ATP-dependent RNA helicase DDX17 462 703 - -
Spst6g01491 1168 Gene3D - 705 875 IPR027417 -
Spst6g01491 1168 SUPERFAMILY WW domain 15 53 IPR036020 GO:0005515
Spst6g01491 1168 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Spst6g01491 1168 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 495 523 IPR014014 GO:0003724
Spst6g01491 1168 MobiDBLite consensus disorder prediction 219 246 - -
Spst6g01491 1168 MobiDBLite consensus disorder prediction 1123 1137 - -
Spst6g01491 1168 MobiDBLite consensus disorder prediction 181 200 - -
Spst6g01491 1168 MobiDBLite consensus disorder prediction 876 1168 - -
Spst6g01491 1168 Pfam Helicase conserved C-terminal domain 726 834 IPR001650 -
Spst6g01491 1168 CDD WW 23 54 IPR001202 GO:0005515
Spst6g01491 1168 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Spst6g01491 1168 SMART ultradead3 514 717 IPR014001 -
Spst6g01491 1168 Pfam WW domain 22 52 IPR001202 GO:0005515
Spst6g01491 1168 FunFam ATP-dependent RNA helicase RhlB 704 876 - -
Spst6g01491 1168 Gene3D - 471 704 IPR027417 -
Spst6g01491 1168 MobiDBLite consensus disorder prediction 1072 1087 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01491 Spst-Chr6 13987564 13994048 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01491 493 872 Eukaryotic Initiation Factors Gene Family AT3G19760 33.420 4.38e-63 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01491 K12823 - gmx:100807830 1453.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01491 6 13987564 13994048 Spst6g01491 6 13987564 13994048 ECH