Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01490 ATGCAGATGCAGGTGTGCAATTTAAGCCCAAGTACAATTCACGGTATGATTGAAAGAGATATGAATGGTGAAGAGCTAAAGAGTGAGGGAAGTGAGTTAATTATGAGCATGGAAGCTGATGCTACCACCACTCCACAGTTATCACTCGCCGACACAGAAATCAACTGGGACAGGTTGGACAAAACCAAGTTCCACGTTATCGGTGCCATTCTCTTCACAGCTCAATCAGGTCTGCTTCATCCAACTGCCGTGGTAAAGACACGCATGCAGGTGGCTGGGTCGGGGCTCTCGAACCTGCGAGGAACGTCGGTGCTGGCCCGCATTCTGCGAAGCGACGGTGTTCCGGGAATCTTCAGAGGCTTTGGCACTTCCGCCATTGGTTCAATCCCCGGTAGAGTTCTTGCGCTCACCTCTCTCGAGGTCTCCAAGGACATCGTCCTGAAACACACGCAAGCCACTCACATTCCAGAAGCGTCTCGCGTTGGCCTTGCCAACGCACTCGCTGGCATGGTCTCCAACTTGGTCTCCTGCATCTACTTTGTGCCCTTGGATGTGGTTTGTCAGAGGTTGATGGTGCAGGGTCTTCCGGGGACAACGTTTTGTAGAGGGCCGTTTGATGTTGTTCGGAAAGTTGTGGAGGCGGAGGGGTTTCGTGGCTTGTATAGGGGTTTTGGATTAACCGCGGTTACGCAGTCCCCTGCTTCTGCGCTTTGGTGGGGTTCATATGCTGCCGCACAACACCTAATTTGGAGGAGTTTGGGCTACAAAGATGGTACGGGTAACAAACCTTCACATGTGGAAATGGTGACCGTTCAGGCTAGTGCTGGTATGGTGGCTGGTGTTTGTTCCTCTGTTATCACTACTCCCATAGATACTGTGAAAACACGTCTTCAGGTGATGGACAACTATGGTTCTGAAAGACCATCAGTACTGAAGACAGCAAAGATTCTCCTCAAGGAAGATGGATGGTGGGGATTTTACAGGGGGTTTGGTCCAAGATTTTTAAATATGTCACTTTATGGAACAACCATGATTGTTACTTATGAACTGATAAAGAGATTATCGGTTCAATCAAGTCTGAGGTTGGAATATGGAGAATTATTGTCTTTCACTTTATTCTTCATTCCAATGGCTTTAAATGCTGGATTGGACATAAGAGAGCATTATGGTATTATCCATGCTTCCTCTTCGCCAAATATACATGCTGTGTCGTTCTGCATCCTTAAACTTGGTAAAGCTTTTATGCTACCAGAACCTCACATCAATAACGTTAATACGCAACAAACAATGGGTTTATCTTTTGGCAAGATTTTCTCTCGTCTATGCGCTAAGAAGGAGATGCGAATTCTTATGGTTGGTCTTGATGCCGCTGGTAAAACCACAATATTGTATAAACTGAAGTTAGGGGAGATTGTGACCACAATTCCTACAATTGGATTTAACGTGGAGACTGTGGAGTATAAGAACATAAGCTTCACTGTGTGGGATGTTGGTGGTCAGGATAAGATTCGACCATTGTGGAGACACTACTTCCAAAACACACAAGGGCTTATTTTTGTGGTAGACAGCAATGATCGTGATCGTGTTGTTGAGGCTAGAGATGAGTTACACAGGATGCTGAATGAGGATGAATTAAGAGATGCTGTGTTGCTTGTTTTTGCAAACAAGCAAGATCTTCCTAATGCCATGAACGCTGCTGAAATCACTGATAGACTTGGTCTAAACTCTCTGCGCCAGCGCCACTGGTATATCCAAAGTACATGTGCTACATCTGGTGAAGGTTTATACGAAGGACTAGACTGGCTTTCAAACAACATTTCAAGCAAGGCTTCCTTTAAATAG 1842 0.4571 MQMQVCNLSPSTIHGMIERDMNGEELKSEGSELIMSMEADATTTPQLSLADTEINWDRLDKTKFHVIGAILFTAQSGLLHPTAVVKTRMQVAGSGLSNLRGTSVLARILRSDGVPGIFRGFGTSAIGSIPGRVLALTSLEVSKDIVLKHTQATHIPEASRVGLANALAGMVSNLVSCIYFVPLDVVCQRLMVQGLPGTTFCRGPFDVVRKVVEAEGFRGLYRGFGLTAVTQSPASALWWGSYAAAQHLIWRSLGYKDGTGNKPSHVEMVTVQASAGMVAGVCSSVITTPIDTVKTRLQVMDNYGSERPSVLKTAKILLKEDGWWGFYRGFGPRFLNMSLYGTTMIVTYELIKRLSVQSSLRLEYGELLSFTLFFIPMALNAGLDIREHYGIIHASSSPNIHAVSFCILKLGKAFMLPEPHINNVNTQQTMGLSFGKIFSRLCAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDRLGLNSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSKASFK 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01490 613 FunFam ADP-ribosylation factor 1 430 610 - -
Spst6g01490 613 SUPERFAMILY Mitochondrial carrier 57 350 IPR023395 -
Spst6g01490 613 PRINTS GTP-binding SAR1 protein signature 448 471 IPR006689 GO:0003924|GO:0005525
Spst6g01490 613 PRINTS GTP-binding SAR1 protein signature 503 528 IPR006689 GO:0003924|GO:0005525
Spst6g01490 613 PRINTS GTP-binding SAR1 protein signature 548 569 IPR006689 GO:0003924|GO:0005525
Spst6g01490 613 PRINTS GTP-binding SAR1 protein signature 476 500 IPR006689 GO:0003924|GO:0005525
Spst6g01490 613 NCBIfam small GTP-binding protein domain 445 572 IPR005225 GO:0005525
Spst6g01490 613 Pfam ADP-ribosylation factor family 435 606 IPR006689 GO:0003924|GO:0005525
Spst6g01490 613 Pfam Mitochondrial carrier protein 271 356 IPR018108 -
Spst6g01490 613 Pfam Mitochondrial carrier protein 164 250 IPR018108 -
Spst6g01490 613 Pfam Mitochondrial carrier protein 67 149 IPR018108 -
Spst6g01490 613 ProSiteProfiles small GTPase Arf family profile. 440 606 - -
Spst6g01490 613 ProSiteProfiles Solute carrier (Solcar) repeat profile. 160 248 IPR018108 -
Spst6g01490 613 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 45 358 - -
Spst6g01490 613 Gene3D Mitochondrial carrier domain 156 361 IPR023395 -
Spst6g01490 613 Gene3D - 434 612 IPR027417 -
Spst6g01490 613 CDD Arf1_5_like 447 605 IPR045872 GO:0003924
Spst6g01490 613 SMART sar_sub_1 430 606 IPR006689 GO:0003924|GO:0005525
Spst6g01490 613 ProSiteProfiles Solute carrier (Solcar) repeat profile. 267 354 IPR018108 -
Spst6g01490 613 ProSiteProfiles Solute carrier (Solcar) repeat profile. 64 145 IPR018108 -
Spst6g01490 613 SMART rab_sub_5 447 580 - -
Spst6g01490 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 444 607 IPR027417 -
Spst6g01490 613 SMART arf_sub_2 430 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01490 Spst-Chr6 13976910 13987158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01490 51 354 Chloroplast and Mitochondria Gene Families AT5G15640 49.837 1.39e-98 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01490 K15121 - gmx:112997745 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01490 6 13976910 13987158 Spst6g01490 6 13976910 13987158 ECH