Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01485 ATGCAGTTCCCAGAAGCGCAGAAGGCCTTAAATGGTGAAAAGATTAACACCACTGGCGAAGTCGATTCCGGCGAGCGCACCGTGTCACCGTCAACATCGTCGGCAAGCATTTCTTTCACTGTGTCAATGAGAGGCAAAATTGGAATAAGGAGCCCAAACCCCACTATCTCCTATGCCACCAGAAGAGCGCTAGTTGCATTTTCTACCTCATCTGGTTTTGGTGATGGTGGCCGCGGTCGCGGTCGTGGAGGCTCACTCCCTGGTTCAGGGCCGTTTAATTTCAATGAAAGAGCTCCTGGTAAGCCTAATTCCAGTGAGCCCAAATCTGACACAACAGAGTCACCCATTCCTCCTGGTTCTGGGCATGGCAAGCCAATGCCTCAGTCTGGTGTTCCTTCTTTCTCATCATTTTTATCTTCCATAAATCAGCCACCGGCTGGACGTGGGCGAGCTACTGTACCTCAAACTCAAAATGATTTGCAGGCAACTGCTGGTTGGGGCCGAGCTACTGTACCTCAGCCTCAAAATAATTTGCAGGCACCTGCTGGTCGTGGCCGTGCTACTGTACCTCAACCACAAAATTATTTGCAGCCACCTGCTGGTCGCGGCCAAGCTACTGTACCTCAACATTCGCATCCACCTGCTGGTCATGGCCGAAGTACTGTACCTCAACCTCAAAATGATTTGCAGCCACCAGACTCTGGACCCATAAAACCCATTTTCTTTAAAAGAGAGGACAGTGTTTCTCCAACATCGACAGATGATTTTTCTATTGATCACGAGCATGTTAACAAACTTCCAGGCAGCATAATAGGGGTGTTGTCTGGACTTGGACGGGGTAAAACCATGAAACAGGCAGATCAGGGAACACCAGTTACCGAAGAAAATAGGCATCTTCGCACTCAACGACCTCCTGGTGCGGCTGCATCTGGGACTTCACCTGAGAGACAGCCAATACCAAGCAGGGAGGATGCAGTCAGGAATGCACGAAAATTTTTGTCACAAGGTGAGGATGATGGAAGTGGCACTGGAAGAGGAAGAGGATTTAGAGAGAGAGGTGGGCTTGGTCGGGGTAGGGGCAGAGGCAGAGGCCGAGGCATTGGAAGAGGAGGGTTCAGAAGGAGGGATGCGGGTGAAAGTGTAGGTCAACAGCAGGATGCAGAGGATGCATATGCTACAGGGCTATATGTTGGAGATGATGCAGATGGTGAGAAATTAGCCAAAAAGTTTGGGCCTGAGATAATGAATCAGTTAACTGAAGGATTTGAGGAGATGGCTGGTAGAGTTTTACCATCACCATTAGAGGATGAGTATTTGGACGCATTAGACATCAATTATGCAATTGAATTTGAGCCAGAATATTTGGTGGATTTTGATAATCCAGATATTGATGAGAAGGAACCAATTCCACTTCGGGATGCACTTGAGAAGATGAAACCATTCTTGATGGCATATGAGGGGATTCAAAGTCAGGAAGAATGGGAGGAAATAATGGAAGAGACAATGGCACGAGTTCCATTATTGAAAAAGATTGTTGATCACTATAGCGGACCAGATAGGGTAACTGCAAAGAAGCAACAAGAAGAATTAGAAAGAGTTGCTAAAAGTCTTCCTAAAAGTGCACCATCTTCTGTGAAACAATTTACTGACCGTGCTGTTATCTCTCTTCAGAGCAACCCAGGCTGGGGATTTGACAAGAAATGCCATTTCATGGATAAGCTGGTTTGGGAAGTGTCTCAGCATTACAACACAAAACAAAATAAAGTAGGACCACGTCATGCATGGGCTGAAATCTTCCATGGAACAGGTTCGTGGTTACGGAATGCATCGGTTTTCCAGTTTTCACTTCTCACAATTTTTGCGCTGAGTTCGGTTTTGATTTTGCAGTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAGGCTCGCGACCGCGTCACCAATGAGACCATCGCGCTCAAGAAGATTCGCCTCGAGCAGGAGGATGAGGGGGTTCCCAGCACCGCCATTCGCGAGATTTCTCTCCTGAAAGAGATGCAGCATAGGAACATTGTTAGGTTGCAGGATGTAGTGCACAGTGAGAAGCGATTGTATCTGGTTTTTGAGTATCTGGACTTGGACCTAAAGAAACACATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAAATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAGTTCTTCATCGAGACTTGAAACCACAGAATTTGTTGATAGATCGCCGTACCAATTCATTAAAGCTTGCTGATTTTGGATTGGCTAGGGCATTTGGCATTCCCGTCAGGACATTTACTCATGAGGTGGTGACATTATGGTACAGAGCTCCAGAAATATTGCTTGGGTCTCGTCATTATTCTACCCCAGTTGATGTTTGGTCAGTGGGATGCATATTTGCAGAGATGGTAAACCGACGACCTTTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGAATCTTGGGTACACCAAATGAAGAAACATGGCCTGGAGTAACTGCATTACCGGATTTTAAATCAACATTTCCCAAATGGCCACCTAAGGACCTAGCAACTGTCGTTCCAAATCTTGATGCAGCTGGGCTTAATCTTCTTTCTAGTATGTTATGCTTGGATCCCAGCAAAAGAATTACCGCCAGGATCGCTGTTGAGCATGAATACTTCAAAGACATTAAATTTGTACCCTGA 2763 0.4593 MQFPEAQKALNGEKINTTGEVDSGERTVSPSTSSASISFTVSMRGKIGIRSPNPTISYATRRALVAFSTSSGFGDGGRGRGRGGSLPGSGPFNFNERAPGKPNSSEPKSDTTESPIPPGSGHGKPMPQSGVPSFSSFLSSINQPPAGRGRATVPQTQNDLQATAGWGRATVPQPQNNLQAPAGRGRATVPQPQNYLQPPAGRGQATVPQHSHPPAGHGRSTVPQPQNDLQPPDSGPIKPIFFKREDSVSPTSTDDFSIDHEHVNKLPGSIIGVLSGLGRGKTMKQADQGTPVTEENRHLRTQRPPGAAASGTSPERQPIPSREDAVRNARKFLSQGEDDGSGTGRGRGFRERGGLGRGRGRGRGRGIGRGGFRRRDAGESVGQQQDAEDAYATGLYVGDDADGEKLAKKFGPEIMNQLTEGFEEMAGRVLPSPLEDEYLDALDINYAIEFEPEYLVDFDNPDIDEKEPIPLRDALEKMKPFLMAYEGIQSQEEWEEIMEETMARVPLLKKIVDHYSGPDRVTAKKQQEELERVAKSLPKSAPSSVKQFTDRAVISLQSNPGWGFDKKCHFMDKLVWEVSQHYNTKQNKVGPRHAWAEIFHGTGSWLRNASVFQFSLLTIFALSSVLILQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFVKDPRQVKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNRRPLFPGDSEIDELFKIFRILGTPNEETWPGVTALPDFKSTFPKWPPKDLATVVPNLDAAGLNLLSSMLCLDPSKRITARIAVEHEYFKDIKFVP 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01485 920 ProSiteProfiles Protein kinase domain profile. 630 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g01485 920 CDD STKc_CDK1_CdkB_like 630 913 - -
Spst6g01485 920 MobiDBLite consensus disorder prediction 1 36 - -
Spst6g01485 920 MobiDBLite consensus disorder prediction 343 358 - -
Spst6g01485 920 Pfam Protein kinase domain 630 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g01485 920 Gene3D Transferase(Phosphotransferase) domain 1 712 918 - -
Spst6g01485 920 MobiDBLite consensus disorder prediction 11 36 - -
Spst6g01485 920 MobiDBLite consensus disorder prediction 320 334 - -
Spst6g01485 920 FunFam Cell division control protein 2 627 710 - -
Spst6g01485 920 MobiDBLite consensus disorder prediction 129 182 - -
Spst6g01485 920 Gene3D Phosphorylase Kinase; domain 1 627 710 - -
Spst6g01485 920 SMART serkin_6 630 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g01485 920 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 43 157 - -
Spst6g01485 920 ProSitePatterns Protein kinases ATP-binding region signature. 636 659 IPR017441 GO:0005524
Spst6g01485 920 MobiDBLite consensus disorder prediction 98 116 - -
Spst6g01485 920 SUPERFAMILY Protein kinase-like (PK-like) 627 916 IPR011009 -
Spst6g01485 920 ProSitePatterns Serine/Threonine protein kinases active-site signature. 749 761 IPR008271 GO:0004672|GO:0006468
Spst6g01485 920 MobiDBLite consensus disorder prediction 69 386 - -
Spst6g01485 920 FunFam Cell division control protein 2 homolog 712 918 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01485 Spst-Chr6 13907381 13931615 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01485 629 920 Core Cell Cycle Gene Families AT3G48750 84.247 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Spst6g01485 Pkinase 7.6e-78 CL0016