Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01482 ATGTGCAGCAGCATCTTTGGGCCAATAATCATGGACAATTACCAAGGTGATTTAACTGACATAGTCCGAGCCAGTGGTGGAGCATATGGTAGCAGCAGCTGCAGCACAGGCACTTCATCTTCTGAATTACCTACCACATCTCATCACCATACTATTACTCACACCCTCTCTCATAATGATCACTGGCACCATCACTTCTCTTCTTCTTCTTCTGATCCCATCACTTTCACTTCTGTGCTTCAAGACCCCAGAGGAGGCACCAACTTTGGTGATCCATTCTCCACCATGAGAGATCCCTTCCTTCAGGAGCTTGACATGCCTTCAGCTTCTACCTACTTCACTGGCGGTTTGGAAGAAGCAGCTGCAAGTTTTGGTGCTGCCGCTGTTAATACTAATGCTAATACTAGTACCACTGTTTTTGCTGCACACAAGATTCTTGAGGAACATGACATGAGAAGACCTTGTAAAAACATATTCTCCAACATGATTCAGATCTCTCCCAATGCAAAGTTACCGGTCTCACCCTATGATTCTACCACGGCCATGGCACCTTCTCCAAGGCCAATTAAACCTCCTGCTGTTGTTTCACCCAACATGGTTAATACAAATGCCTCCAAGGATTGCCTTGTGGACACCACGGGAGTGCAGATCTCATCTCCACGGAATCCGGGTCTTAAACGAAGGAAGAACCAGGCCAAAAAGGTGGTTTGTATTCCTGCACCAGCAGCTGCAAACAGCAGACAAACTGGAGAGGTAGTTCCGTCAGATTTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCACCTTATCCCAGGGGTTACTACAGATGCAGTAGCTCAAAGGGTTGCTCTGCGAGGAAGCAAGTTGAGAGGAGCAGAACAGACCCAAACATGTTGGTTATTACATACACATCAGAGCACAACCATCCGTGGCCAACTCAAAGAAATGCTCTGGCTGGTTCAACAAGGTCACAGCCATCCAAGAATAATGCTGGAAATTCAAAGAGCTCAGAAGTCTCAAACCCCCAAAAGAGCTCAACATCAAAAGCAAAGGATGAGCAGCAGCAGGAGAGCAACAACAGTGAGGGCAATGTGTCCCCAGTTCTTGCTGGGAATTCATCAGCAAACAGTGCATCTGTGAAGGAAGAGAATATGGAAGACATAGAGAAGCAGCTTGAGATGGATGAGGGGGAGTTCAGTGATGGCCTCCCTTACAAGCCTTGTTTGATTGATCAGAGTAATAATCAATCTGAGGATTTCTTTGCTGAGTTGGGAGAAATAGAAGCTGACCCACTGGACCTTTTGTTTACTCAAGGTTTTGGCTCAGCCGATGATCAAAGGGAATCCAAGGCCTTAGATCCATTCCATCTGTTTGACTGGTCAGGAGACAACAACACCAACGCCAACACCAGTTCATTTGAAGAACCTAATACAAAAAGAAGGTTATAA 1458 0.4588 MCSSIFGPIIMDNYQGDLTDIVRASGGAYGSSSCSTGTSSSELPTTSHHHTITHTLSHNDHWHHHFSSSSSDPITFTSVLQDPRGGTNFGDPFSTMRDPFLQELDMPSASTYFTGGLEEAAASFGAAAVNTNANTSTTVFAAHKILEEHDMRRPCKNIFSNMIQISPNAKLPVSPYDSTTAMAPSPRPIKPPAVVSPNMVNTNASKDCLVDTTGVQISSPRNPGLKRRKNQAKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSKNNAGNSKSSEVSNPQKSSTSKAKDEQQQESNNSEGNVSPVLAGNSSANSASVKEENMEDIEKQLEMDEGEFSDGLPYKPCLIDQSNNQSEDFFAELGEIEADPLDLLFTQGFGSADDQRESKALDPFHLFDWSGDNNTNANTSSFEEPNTKRRL 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01482 485 ProSiteProfiles WRKY domain profile. 249 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst6g01482 485 MobiDBLite consensus disorder prediction 279 388 - -
Spst6g01482 485 MobiDBLite consensus disorder prediction 298 384 - -
Spst6g01482 485 MobiDBLite consensus disorder prediction 463 478 - -
Spst6g01482 485 MobiDBLite consensus disorder prediction 462 485 - -
Spst6g01482 485 FunFam probable WRKY transcription factor 14 228 308 - -
Spst6g01482 485 Coils Coil 381 401 - -
Spst6g01482 485 Gene3D WRKY domain 228 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst6g01482 485 Pfam WRKY DNA -binding domain 256 313 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst6g01482 485 SMART WRKY_cls 254 314 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst6g01482 485 SUPERFAMILY WRKY DNA-binding domain 252 315 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst6g01482 485 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 16 439 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01482 Spst-Chr6 13885510 13888280 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01482 1 447 WRKY Transcription Factor Family AT2G34830 43.939 5.05e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst6g01482 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01482 - - aprc:113852911 755.747