Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01473 ATGGGTGCTCCGAAGCAGAAATGGACTGCCGAAGAGGAAGCAGCACTTAAAGCTGGAGTTATCAAGCATGGTGTTGGTAAATGGCGCACCATACTGAAGGATCCAGAGTTTAGTAGTGTCTTATACCTGCGGTCGAATGTTGATCTCAAGGATAAATGGAGAAATCTGAGCGTGATGGCAAATGGATGGAGCTCTAGGGAAAAGTCTAGGTTAGCAGTCAGAAGGGTGCATCATACCCCAAAACAGGATGAACACTCTATTACTGTCACTCCTGTTGCTCCAAGTGATGAAGACATAGTTGATGTTAAGCCTCTTCAAATTTCTAGAGATGTGCATATTCCGGGTCCAAAAAGGTCTAATTTAAGTTTGGATAAACTTATAATGGAAGCAATCACTAGCTTAAAGGAGAATGGTGGTTCTAATAAGACAGCTATTGCGGCTTTCATAGAGGACCAATATTGGGCATTGCCTGGCTTAAAAAGGATGTTGTCTGCAAAATTAAAGTTTTTGACAGCAAGTGGAAAACTGATCAAGACAAACTCTGTAGTGTTACTCATTATAAGAGTGACGGAAGTGGGTGGGGTGGAATTTGGGCTTTATGACAGGACAATAGAAGATCTTAGTGTTGGGTTGGCTTTGATATATCAGGTAAATCGCAAGTATAGGATTGCGCCTATAGCAGCATATTCTGACAGAAGAAGAAACTCATCCATGTTATTTTTTGATGGGAGGCAGAAAACCTCTATGAAAATTGAAAAGGATGAGACCAACATCCTTACTAAATCTCAGATAGATTTAGAGTTAGCAAAGATAAGGTCCATGACTCCACAAGAGGCAGCTGCATTTGCTGCTCGTGCAGTTGCTGAAGCAGAAGCCGCCATAGCAGAAGCAGAAGAGGCAGCCAAGGAGGCTGAGGCAGCAGAAGCCGATGCAGAGGCAGCACAAGCTATTGCAGATGCTACAACGAAATCAGGGAAAGGAAGAAAGTCCCCAAGGAGGGTAAAAACTCTTCCTTCCCCCTCTTTTCTCCTTCATGACACTAAAATACATCTGTAG 1056 0.4299 MGAPKQKWTAEEEAALKAGVIKHGVGKWRTILKDPEFSSVLYLRSNVDLKDKWRNLSVMANGWSSREKSRLAVRRVHHTPKQDEHSITVTPVAPSDEDIVDVKPLQISRDVHIPGPKRSNLSLDKLIMEAITSLKENGGSNKTAIAAFIEDQYWALPGLKRMLSAKLKFLTASGKLIKTNSVVLLIIRVTEVGGVEFGLYDRTIEDLSVGLALIYQVNRKYRIAPIAAYSDRRRNSSMLFFDGRQKTSMKIEKDETNILTKSQIDLELAKIRSMTPQEAAAFAARAVAEAEAAIAEAEEAAKEAEAAEADAEAAQAIADATTKSGKGRKSPRRVKTLPSPSFLLHDTKIHL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01473 351 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Spst6g01473 351 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 225 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst6g01473 351 FunFam Telomere repeat-binding factor 1 8 86 - -
Spst6g01473 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Spst6g01473 351 FunFam Telomere repeat-binding factor 1 2 58 - -
Spst6g01473 351 SMART sant 4 59 IPR001005 -
Spst6g01473 351 Coils Coil 280 317 - -
Spst6g01473 351 PANTHER SINGLE MYB HISTONE 4 1 328 IPR044597 GO:0003691
Spst6g01473 351 Pfam linker histone H1 and H5 family 122 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst6g01473 351 SMART h15plus2 117 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst6g01473 351 Gene3D - 116 184 IPR036388 -
Spst6g01473 351 MobiDBLite consensus disorder prediction 307 339 - -
Spst6g01473 351 SUPERFAMILY "Winged helix" DNA-binding domain 117 180 IPR036390 -
Spst6g01473 351 Gene3D - 8 88 - -
Spst6g01473 351 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Spst6g01473 351 CDD SANT_TRF 6 56 - -
Spst6g01473 351 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01473 Spst-Chr6 13704889 13708376 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01473 1 275 Single Myb Histone (SMH) Gene Family AT1G49950 53.571 9.21e-91 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst6g01473 Linker_histone 2.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01473 K09422 - gmx:100780698 442.195