Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01428 ATGGCTAACTATTCCCACCCTCATATCTGCCAATGTCTGAGTCGCGTGCTAGCCTTCCGGCGACATTTTCCGGTCACCATCACCGGAAACCGCCATAAAACTGGTCAACAGTTGGTGGAGGATGTGTTGTCTTTGGCTCAAGGCCTACTTCACCTTGGACTCGCACCTGGTCACGTGGTTGCCATCTCTGCATATAATAGTGATAGGTATCTGGAATGGTTATTAGCCATTGCATTTGTTGGAGGAATAGCTGCTCCTCTGAACTATAGATGGAGTTTTGAAGAGGCAAGATTAGCATTGGCTGCTGTGAAGCCAGTGTTATTAGTGACTGACAACAGCAGTTACACATGGTACTCAACAAAACTCCAGAAAAATGACATTCCATCGCTGAAGTGGCATATTTTGTTGGATTCCCCTTCCTTTGATTTTACTGAGTGGAACGTGTTAACACCAGAAATGATTAAGAGGCATCCTGTAAAGCTTGTACCATTTGATTACTCATGGGCACCTGAAGGCACTGTCATAATATGCTTTACTTCAGGAACTACAGGAAAGCCTAAGGGAGTTTCTCTAAGCCATGGAGCTTTGCTTATACAATCCTTAGCCAAGATTGCAATAGTTGGCTACAACGAGGATGATGTCTATCTGCATACTGCACCATTATGCCATATTGGTGGCTTGTCATCAGCCATGACCATGCTTATGGTTGGAGGTTGCCATGTCTTGATGTCAAAGTTTGATGCAGAATCAGCTATTGGTGCCATAGAGCAATATGCAGTGACATCTTTTATCACAGTTCCTGCAATAATGGCCAGTCTGACTTCTATAATTAGGCAGAAAGATATCTGGAAAGGAGGAGAAACTGTCAAGAAAATACTCAATGGGGGTGGAAGCCTCTCACATGAGCTCATCCAGGACACTAGCATATTCTTTCACAATGCTAAACTTATTTCAGCTTATGGGATGACAGAGACATGCTCTTCATTGACATTCCTGACACTGTATGATCCAATGTATGAAAAGACAAACCAGTCCCTTCAAACATTTGATGTCGCAGGATCCAAGTTTAGTCAGCAGCCACAAGGTGTTTGTGTTGGCAAGCCTGCTCCCCATGTAGAACTGAAGATAAGTGCTGATGCTTCTGGGATAATTGGGAGAATTCTAACTAGAGGACCACACATAATGCTTAGGTATTGGGAAACTCTCAGAAATCCATTAAATCCAAATAATGAAGCCTGGCTTGACACAGGTGACATTGGATCAATTGATCATTATGGTAATTTGTGGCTCCTTGGTCGAACAAATGGTCGAATCAAGAGTGGTGGGGAGAACATTTACCCTGAAGAGGTTGAGGCAATTCTACTACAACATCCAGGGATTGCAAGTGTTGTTGTTCTGGGAATCCCAGATGCTCACCTAACAGAGATGGTAGTAGCGTGTATCCAACTTAGGGAAAATTGGCAATGGTCAGAGCAGTCGACTATTTCAAATGAAGAGCCTATGCTATCTAGAAAGAATCTCCATCAATATTGTATACAAAATCATTTAAGCAGGTTTAAGATACCAAAAATGTTTATTACATGGAAAAAGCCATTTCCACTCACTACCACAGGGAAAATAAAAAGAGATCGAGTCAGAAAGGAAGTTATGTCTCAACTAAAATCTTTACATAGTAATCTTTGA 1683 0.4207 MANYSHPHICQCLSRVLAFRRHFPVTITGNRHKTGQQLVEDVLSLAQGLLHLGLAPGHVVAISAYNSDRYLEWLLAIAFVGGIAAPLNYRWSFEEARLALAAVKPVLLVTDNSSYTWYSTKLQKNDIPSLKWHILLDSPSFDFTEWNVLTPEMIKRHPVKLVPFDYSWAPEGTVIICFTSGTTGKPKGVSLSHGALLIQSLAKIAIVGYNEDDVYLHTAPLCHIGGLSSAMTMLMVGGCHVLMSKFDAESAIGAIEQYAVTSFITVPAIMASLTSIIRQKDIWKGGETVKKILNGGGSLSHELIQDTSIFFHNAKLISAYGMTETCSSLTFLTLYDPMYEKTNQSLQTFDVAGSKFSQQPQGVCVGKPAPHVELKISADASGIIGRILTRGPHIMLRYWETLRNPLNPNNEAWLDTGDIGSIDHYGNLWLLGRTNGRIKSGGENIYPEEVEAILLQHPGIASVVVLGIPDAHLTEMVVACIQLRENWQWSEQSTISNEEPMLSRKNLHQYCIQNHLSRFKIPKMFITWKKPFPLTTTGKIKRDRVRKEVMSQLKSLHSNL 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01428 560 Gene3D - 436 553 IPR045851 -
Spst6g01428 560 Pfam AMP-binding enzyme C-terminal domain 449 539 IPR025110 -
Spst6g01428 560 PANTHER ACYL-COA SYNTHETASE 33 552 - -
Spst6g01428 560 SUPERFAMILY Acetyl-CoA synthetase-like 7 554 - -
Spst6g01428 560 CDD AFD_class_I 176 541 - -
Spst6g01428 560 ProSitePatterns Putative AMP-binding domain signature. 176 187 IPR020845 -
Spst6g01428 560 Gene3D - 2 433 IPR042099 -
Spst6g01428 560 Pfam AMP-binding enzyme 26 440 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01428 Spst-Chr6 13251170 13256903 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01428 34 555 Monolignol Biosynthesis Gene Families AT4G05160 27.072 4.04e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01428 K14760 - gmx:100809925 973