Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01424 ATGGTAATCTTGTCCAATGGTAATCTTGAAAATGTCAATCAGGGGATTGCTAAGAAGCGGAGGAGAGCTCTAGTGGCTTTTTCTCAATCTAATAAAAGTGTCATCAAATTTGACGTCCCAAAATACGAGAGCAACCTCCAAATTAAGAAATGGGTCCAGAGCCTTCAAGATCAAGGGCGAAAGAAAGCTCGGATATTGAGGAAGGTCGATTGTAACAGAAAAATGGGAGTCATCCACGGAGGAGGCTTCGTATCCAGGAGAGATGCTTCGAAGGTCCAACAGCTGGTCGACGATTGTGGCTACAATGTTGCGACACTATTGATACTTGAGGGGAGGGATTTCTCCTACAGTCCTCATCTTGCTTATAGGAGGTGTTTTGGCTTATTTCTGTGGCCAATAGTGGTATCTGGTGAAGGAGCTTCTGGTTTTCATCTTTTGGTGGTCAGGACATTTGTGGTTTTAAAGAATACCTCCTTTGGTTTTGTCTGTACGGAAGCCCGTCAGACTATGAAGCCCTTTGTCCTTTTAGTGTTATCTTTATATTTCTTCTCCGTGGTGGGGCAGCTTCCTTCTCAGGACATTTTAGCATTGCTGGAGTTTAAGAAAGACATCAAACATGACCCTAGTGGTTATGTGCTCAATTCCTGGAATGAGGAATCCATTGACTTCGATGGATGCCCATCTTCATGGAATGGAGTTTTGTGTAATGGTGGTAATGTTGCTGGGGTTGTCCTTGATAACTTGGGTCTCTCTGCTGACACTGACTTGAGTGTGTTTTCAAATCTCACCAAGCTTGTGAAACTCTCTATGTCCAACAATTCCATAACAGGAAATCTACACGGTAACATTGCTGATTTCAAAAGCCTAGAATTCCTGGATATTTCCAATAACCTCTTTTCCTCATCCTTGCCATTGGTGATTGGTAAGTTAAGCAGTTTGCAGAATCTGTCTTTGGCTGGAAATAATTTCTCTGGCCCAATTCCTGACTCTATTTCAGAAATGTCGTCCATCAAGTCCCTGGATTTGAGCCGCAACTCCTTTTCTGGAGAGCTGCCAGTGTCGTTGACAGAAGTGACTAGCCTTGTATCTCTTAATTTGTCTCATAATGGCTTCACTGGAAAAATTCCTAAAGGTTTTGAGCTCATTCCTGCCCTTGAAAAACTTGACTTGCATGGGAATATGCTTGAAGGTAATTTAGATGTTGAATTTATGCTTTCATCAAGTGCCAGCTATGTTGATTTAAGTCAGAACAAGCTGTCAAGTTCTGATTCCAAGCAGAAGTTTCTACCTCGGCTATCTGAAAGTATTAAGCATCTGAATTTAAGTCACAACCAGCTTACTGGATCTTTAGCCAATGGAGTTGCAGAACCTGTTTTTGAAAACTTGAAAGTGTTGGACCTCAGCTACAATCAGTTGGATGGAGAATTGCCTGGATTTGATTTTGTTTATGATCTCCAGGTCCTCAGGCTTAGCAACAATAGATTTTCAGGATTTATTCCTAATGGCCTACTGAAAGGAGACTCTTTGGTTTTAACTGAACTAGATTTGAGTGCCAACAATCTCTCAGGGCCACTAAGTATAATTACATCAACAACACTTCACTCTCTTAACCTGTCGTCAAATGGATTCACTGGTGAACTGCCACTGCTGACAGGAAACTGTGCTGTACTTGATCTGTCAAATAACAAATTAGAAGGAAATTTAACCAGGATGTTGAAATGGGGGAATATAGAATTTCTTGATCTCAGTGGGAATCATTTGACGGGGACCATTCCTGAGGAAACACCTCAATTTTTGCGACTAAATTATTTGAATCTATCCCATAATTCTCTCAGTAGCTCCCTTCCAAAAGTCTTGATACAGTATCCAAAGCTGAGAGTGCTTGACATTAGTTTCAACCAATTAGATGGACTACTTCGACCTGGTCTTCTCACAATGGCCACATTGCAAGAGCTGCATCTTGAGAACAATATGATATCTGGTGGCATCAATTTCTCATCTTCTCCTGACCAATCTGATCTTCAGATTCTTGATCTTTCTCACAACCAGCTTAATGGTTATTTTCCTGATGAATTTGGGTCATTAACCGGCCTGAAAGTGGTAAATATTGCTGGAAATAATTTCTCTGGTTCACTTCCAACAACCATTGCTGACATGAGTTCACTAGAATCCCTGGATATATCAAAGAATCATTTTACTGGCCCTTTACCGAATAACATGGCAAAGGGGCTCCAAAACTTCAATGCTTCCGAAAATGATCTATCTGGACTCGTCCCAGAAGTTTTTAGGAAGTTCCCTAATTCTTCTTTCTTTCCTGGGAATTCCAAGTTACATTTTCCAAATGGTCCTCCAGGATCTACTGCCACACCTGCTGAACGTTCCAAGAGGAAGCATTTGAACACCATTGTTAAAGTAATAATCATAGTGTCATGTGTGGTTGCGCTCTTCATATTAATCTTACTTGCTGTCTTCATACACTACATACGTATATCAAGATCTCCACAAGAATATGATACAAGTAAGGATATCCACAGGCATCCTCAACCAATTATCTCGGCTCCTGTCCGCACTACTGATAGGGGTGGTGCTTTGGTTGTTTCAGCCGAGGATCTTGTGGCCACACGCAAAGAGTCACCATCAGAGGTTATCAGCTCTGATGAAAAGATGGCAGCTGTAACAGGGTTCTCTCCATCAAAACAAAGCCACTTTTCATGGTCACCAGAATCTGGTGATTCATTCACTGGTGAAAATCTTGCAAGACTAGATACTAGGTCACCAGATCGGTTGATTGGAGAGCTGCATTTTCTTGATGATTCGATAACATTGACACCCGAGGAGCTGTCAAGGGCCCCCGCAGAGGTTCTGGGAAGAAGTAGTCATGGTACTTCTTACAAGGCCACTCTGGAGAATGGTTTGTTGTTAAGAGTGAAGTGGTTGAGAGAAGGAGTAGCCAAACAGAGAAAAGAATTTGTCAAGGAGACCAAAAAATTTGCAAACATCAGACATCCAAATGTAGTGGGATTGAGAGGATATTATTGGGGCCCTACACAACACGAGAAGCTCATTCTTTCAGATTACATCTCACCAGGAAGTCTTGCAAGTTTTCTTTATGATCGACCAGGAAGAAAAGGTCCACCATTAACTTGGACCCAGAGACTCAAAATAGCAGTTGATGTAGCACGTGGCCTGAACTATCTCCATTTTGATCGTGCCATCCCTCACGGGAACCTCAAAGCCACAAATGTGTTGTTAGACACAACTGATATGAATGCACGCGTTGCTGATTACTGCCTTCACCGGCTCATGACTCAAGCAGGTACTATTGAACAGATTCTTGATGCTGGGGTGTTAGGTTATCGTGCTCCGGAGTTAGCTGCCTCCAAGAAGCCAATGCCCTCCTTCAAGTCAGATGTTTATGCTTTTGGAGTGATACTTTTGGAACTTCTAACCGGAAGGTGTGCTGGTGATGTGATATCTAGTGATGAGGGAGGTGTTGATCTGACAGATTGGGTGAGGTTGCGTGTGGCAGAAGGCCGAGGCTCAGAATGTTTTGATGCTGCCTTGATGCCAGAAATGAGCAATCCTGTTGTAGAAAAGGGAATGAAGGAGGTCCTGGGAATAGCCATGCGATGCATTCGATCAGTTTCTGAAAGGCCTGGCATCAAAACTATATATGAAGATCTCTCTTCTATATAG 3696 0.424 MVILSNGNLENVNQGIAKKRRRALVAFSQSNKSVIKFDVPKYESNLQIKKWVQSLQDQGRKKARILRKVDCNRKMGVIHGGGFVSRRDASKVQQLVDDCGYNVATLLILEGRDFSYSPHLAYRRCFGLFLWPIVVSGEGASGFHLLVVRTFVVLKNTSFGFVCTEARQTMKPFVLLVLSLYFFSVVGQLPSQDILALLEFKKDIKHDPSGYVLNSWNEESIDFDGCPSSWNGVLCNGGNVAGVVLDNLGLSADTDLSVFSNLTKLVKLSMSNNSITGNLHGNIADFKSLEFLDISNNLFSSSLPLVIGKLSSLQNLSLAGNNFSGPIPDSISEMSSIKSLDLSRNSFSGELPVSLTEVTSLVSLNLSHNGFTGKIPKGFELIPALEKLDLHGNMLEGNLDVEFMLSSSASYVDLSQNKLSSSDSKQKFLPRLSESIKHLNLSHNQLTGSLANGVAEPVFENLKVLDLSYNQLDGELPGFDFVYDLQVLRLSNNRFSGFIPNGLLKGDSLVLTELDLSANNLSGPLSIITSTTLHSLNLSSNGFTGELPLLTGNCAVLDLSNNKLEGNLTRMLKWGNIEFLDLSGNHLTGTIPEETPQFLRLNYLNLSHNSLSSSLPKVLIQYPKLRVLDISFNQLDGLLRPGLLTMATLQELHLENNMISGGINFSSSPDQSDLQILDLSHNQLNGYFPDEFGSLTGLKVVNIAGNNFSGSLPTTIADMSSLESLDISKNHFTGPLPNNMAKGLQNFNASENDLSGLVPEVFRKFPNSSFFPGNSKLHFPNGPPGSTATPAERSKRKHLNTIVKVIIIVSCVVALFILILLAVFIHYIRISRSPQEYDTSKDIHRHPQPIISAPVRTTDRGGALVVSAEDLVATRKESPSEVISSDEKMAAVTGFSPSKQSHFSWSPESGDSFTGENLARLDTRSPDRLIGELHFLDDSITLTPEELSRAPAEVLGRSSHGTSYKATLENGLLLRVKWLREGVAKQRKEFVKETKKFANIRHPNVVGLRGYYWGPTQHEKLILSDYISPGSLASFLYDRPGRKGPPLTWTQRLKIAVDVARGLNYLHFDRAIPHGNLKATNVLLDTTDMNARVADYCLHRLMTQAGTIEQILDAGVLGYRAPELAASKKPMPSFKSDVYAFGVILLELLTGRCAGDVISSDEGGVDLTDWVRLRVAEGRGSECFDAALMPEMSNPVVEKGMKEVLGIAMRCIRSVSERPGIKTIYEDLSSI 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01424 1231 Pfam Leucine rich repeat N-terminal domain 191 236 IPR013210 -
Spst6g01424 1231 FunFam LRR receptor-like serine/threonine-protein kinase GHR1 189 433 - -
Spst6g01424 1231 SUPERFAMILY L domain-like 209 548 - -
Spst6g01424 1231 PANTHER OS07G0626500 PROTEIN 175 1231 - -
Spst6g01424 1231 Gene3D Ribonuclease Inhibitor 191 351 IPR032675 -
Spst6g01424 1231 Gene3D Ribonuclease Inhibitor 352 425 IPR032675 -
Spst6g01424 1231 Gene3D Phosphorylase Kinase; domain 1 942 1026 - -
Spst6g01424 1231 Gene3D Transferase(Phosphotransferase) domain 1 1028 1231 - -
Spst6g01424 1231 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 524 783 - -
Spst6g01424 1231 Pfam Leucine Rich repeat 435 448 IPR001611 GO:0005515
Spst6g01424 1231 Pfam Leucine Rich repeat 461 475 IPR001611 GO:0005515
Spst6g01424 1231 Pfam Leucine Rich repeat 530 546 IPR001611 GO:0005515
Spst6g01424 1231 FunFam Leucine-rich repeat receptor-like protein kinase 934 1026 - -
Spst6g01424 1231 Gene3D Ribonuclease Inhibitor 426 789 IPR032675 -
Spst6g01424 1231 SUPERFAMILY RNI-like 513 767 - -
Spst6g01424 1231 ProSiteProfiles Protein kinase domain profile. 949 1231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g01424 1231 Pfam Protein tyrosine and serine/threonine kinase 953 1151 IPR001245 GO:0004672|GO:0006468
Spst6g01424 1231 SMART LRR_typ_2 310 334 IPR003591 -
Spst6g01424 1231 SMART LRR_typ_2 672 694 IPR003591 -
Spst6g01424 1231 SMART LRR_typ_2 459 481 IPR003591 -
Spst6g01424 1231 SMART LRR_typ_2 358 381 IPR003591 -
Spst6g01424 1231 SMART LRR_typ_2 719 743 IPR003591 -
Spst6g01424 1231 SMART LRR_typ_2 598 622 IPR003591 -
Spst6g01424 1231 SMART LRR_typ_2 286 309 IPR003591 -
Spst6g01424 1231 SMART LRR_typ_2 623 646 IPR003591 -
Spst6g01424 1231 SMART LRR_typ_2 482 506 IPR003591 -
Spst6g01424 1231 FunFam Pollen receptor-like kinase 1 1027 1231 - -
Spst6g01424 1231 SUPERFAMILY Protein kinase-like (PK-like) 952 1228 IPR011009 -
Spst6g01424 1231 Pfam Leucine rich repeat 674 732 IPR001611 GO:0005515
Spst6g01424 1231 Pfam Leucine rich repeat 580 635 IPR001611 GO:0005515
Spst6g01424 1231 ProSiteProfiles Leucine-rich repeat profile. 461 483 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01424 Spst-Chr6 13209524 13217180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01424 178 1179 Receptor kinase-like Gene Family AT4G36180 28.035 4.10e-83 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Spst6g01424 PK_Tyr_Ser-Thr 1.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01424 - - gmx:100793639 1921.36