Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01415 ATGAGTTTGGTTCCTGAAGACTTACCGAGCTTAGATTTGAGACCTTTTTTTGTTACCAAAACTATCACTGATCTTCTCAGCCACCTTTCCTCCACCCCAAATGCTTCCCACAAGAGTTGCTTGCTCGAAGACTTTCTCAACAGATTGGAACTCGAATTGGACAAGATCCAAGCATTCCAACGCGAACTTCCTCTCTGCATGTTCCTCTTAAATGATGCAATTTCAGCTTTGAAGGCGGAGTTAGAAAAATGCAGAACTTACAAGTCTGAGCCTGTTTTGGAGGAGTTCATTCCTCTGAAGAAAGAGTATCAAGAGAAGAAGGTTAGTGAGAAGGAAAAGGAATGCAGGGACAACAATAATTGGACGAGTTCTTTTCAGCTTTGGAACACTGACGAAGCTTATAAAAGGGACAATGCATATAGATTGGACCAAAAACAAAACAAGAGTAATGAAGAAGAAAGACAATCTGTGGCCAAGGACTATTTCCAATATGCTGGAAATAGAAATGTAGAAAGGGGATTTGTTATGCCTTTGTCCACTTACCTTCTAACAAAGGAAGAATGTGATGTCAATGAACTTTCTCTTCAGACACCTGAAACTGCAGTGAGAAGCAAAAGGGAAAGATGTGGTTCCAGAATCACATCTTGCAGGGTGGTTTCCTCCATCTCTTCGCACCTGCTGCAGCCTCAAAGTGGCCGGAAACAAAGGAGGTGCTGGTCGCCGGAGTTGCATCACCGCTTTGTTAAAGCATTAGAGGAGCTTGGAGGCTCTCAAGCAGCTACTCCAAAGCAAATTAGGGAACTCATGAGGGTTGATGGCCTGACCAACGATGATGTAAAGAGTCATTTGCAAAAATACCGACTTCATACAAGGAGAGTTCCAGTTGCTACAACTGCAGGAGGCTTATGGATGACAAAGAATCCTTGA 927 0.4304 MSLVPEDLPSLDLRPFFVTKTITDLLSHLSSTPNASHKSCLLEDFLNRLELELDKIQAFQRELPLCMFLLNDAISALKAELEKCRTYKSEPVLEEFIPLKKEYQEKKVSEKEKECRDNNNWTSSFQLWNTDEAYKRDNAYRLDQKQNKSNEEERQSVAKDYFQYAGNRNVERGFVMPLSTYLLTKEECDVNELSLQTPETAVRSKRERCGSRITSCRVVSSISSHLLQPQSGRKQRRCWSPELHHRFVKALEELGGSQAATPKQIRELMRVDGLTNDDVKSHLQKYRLHTRRVPVATTAGGLWMTKNP 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01415 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 233 291 IPR017930 -
Spst6g01415 308 Gene3D - 233 291 - -
Spst6g01415 308 Pfam Myb-like DNA-binding domain 236 287 IPR001005 -
Spst6g01415 308 SUPERFAMILY Homeodomain-like 232 292 IPR009057 -
Spst6g01415 308 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 21 305 IPR044787 GO:0003700|GO:0006355
Spst6g01415 308 NCBIfam myb-like DNA-binding domain, SHAQKYF class 234 289 IPR006447 GO:0003677
Spst6g01415 308 Coils Coil 42 62 - -
Spst6g01415 308 FunFam Myb family transcription factor 233 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01415 Spst-Chr6 13097684 13098610 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01415 10 301 G2-like Transcription Factor Family AT2G03500 41.121 1.12e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst6g01415 Myb_DNA-binding 2.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01415 - - vra:106776390 453.751