Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01401 ATGGAGGATTCCGAGGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGACACCGCTCCCTCCGCCGCCGCCGCCGCTCCCTCAGGCCCACTCGTTCAGCACGACTCCTCCGCGGCCGCTTCCGCCGTCTCCAACGGAGGTCCTCCCCCTCCTGCCCCCTCCGCAGCCGACCCCGGGCCCGGCAACGTCCCCGGGCGGCGGAGCTTCCGGCAGACGGTGTGCCGGCACTGGCTGCGTAGCCTGTGCATGAAGGGCGACGCTTGCGGGTTCCTGCACCAGTATGACAAGGCGCGGATGCCTGTTTGCCGGTTCTTCAGGCTCTATGGAGAGTGTCGAGAACAGGATTGCGTGTATAAACACACCAATGAAGACATCAAGGAGTGTAACATGTACAAGTTGGGATTTTGTCCTAATGGGCCTGATTGCCGATATAGGCATGCAAAATCTCCTGGGCCTCCACCTCCTGTTGAAGAGGTCCTTCAGAAGATCCAACATTTATATTCCTACAATTATAATTCATCTAACAAATTTTTCCAACAAAGGGGTTCTAGCTATACCCAACAAGCTGAAAAATCCCAGCTTCCTCAAGGGACTAATTCTACAAATCAAGGGGTGGCTGGAAAACCATTACCAGCAGAGTCTGGAAATGCCCAACCACAGCAACAAGTTCAACAGTCTCAGCAGCAGGTTAGCCAGAGCCAAATACAAAATGTTGCTAATGGCCAGCCTAATCAAGCCAGTAGATCTGCAACCCCTTTACCTCAAGGAATATCTAGGTGTGTTCAGGGTCTTGTAGTTTTCAGTCGAGCTATGTAA 816 0.538 MEDSEGVLSFDFEGGLDTAPSAAAAAPSGPLVQHDSSAAASAVSNGGPPPPAPSAADPGPGNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLYSYNYNSSNKFFQQRGSSYTQQAEKSQLPQGTNSTNQGVAGKPLPAESGNAQPQQQVQQSQQQVSQSQIQNVANGQPNQASRSATPLPQGISRCVQGLVVFSRAM 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01401 271 ProSiteProfiles Zinc finger C3H1-type profile. 68 95 IPR000571 GO:0046872
Spst6g01401 271 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4-RELATED 57 241 IPR045348 GO:0003723|GO:0098789
Spst6g01401 271 SMART c3hfinal6 96 122 IPR000571 GO:0046872
Spst6g01401 271 SMART c3hfinal6 68 94 IPR000571 GO:0046872
Spst6g01401 271 SMART c3hfinal6 124 148 IPR000571 GO:0046872
Spst6g01401 271 SUPERFAMILY CCCH zinc finger 68 99 IPR036855 GO:0046872
Spst6g01401 271 MobiDBLite consensus disorder prediction 180 254 - -
Spst6g01401 271 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 63 124 - -
Spst6g01401 271 MobiDBLite consensus disorder prediction 180 207 - -
Spst6g01401 271 MobiDBLite consensus disorder prediction 214 254 - -
Spst6g01401 271 Gene3D - 64 126 - -
Spst6g01401 271 MobiDBLite consensus disorder prediction 19 64 - -
Spst6g01401 271 ProSiteProfiles Zinc finger C3H1-type profile. 122 149 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst6g01401 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01401 K14404 - gmx:100802826 442.195