Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01395 ATGAAGGAAGGAGGTGGTAGAAAGCAGGGTGCAGCCTCACCCTGTGCTGCATGCAAGCTTCTAAGAAGAAGGTGTGCTCAGGATTGTGTTTTTGCTCCATATTTTCCAGCAGATGAACCCCAAAAGTTTGCAAATGTTCACAAGGTCTTTGGTGCTAGCAATGTCAACAAGATGCTTCAGGATCTACCAATGCATCAACGAGGGGATGCAGTGAGTAGCATGGTGTATGAAGCGAATGCCAGAGTGAGAGACCCTGTTTATGGGTGTGTTGGGGCAATCTCTTCTCTTCAGCAACAAATTGATGTGCTACAGACCCAATTGGCCCTGGCCCAGGCTGAGGTAGCCCACCTTAGGGTGAGACAAAATAGGTGTTTTTTCAATCATGGGCCTACGCCCACCAGCCCAACCAATAGTGGGTTTCCATCATCCAAGACCTTGGACTCACATTCCAAGCCTATTTTTGACATGGATATGGTGGTGGACCAGGGCAGCTATGATGTGGTGGTGCCGACGGTGGGCAGCCACCGTGGGGATGGAGGAGCTGTGGTGGAGGCCGTTCGCCCGCTTGATTAA 573 0.5079 MKEGGGRKQGAASPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPMHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAEVAHLRVRQNRCFFNHGPTPTSPTNSGFPSSKTLDSHSKPIFDMDMVVDQGSYDVVVPTVGSHRGDGGAVVEAVRPLD 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01395 190 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 134 - -
Spst6g01395 190 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Spst6g01395 190 Coils Coil 93 120 - -
Spst6g01395 190 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01395 Spst-Chr6 12870153 12873063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01395 1 129 AS2 family AT1G31320 89.147 7.47e-73 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst6g01395 LOB 2.4e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01395 - - gmx:100794219 316.235