Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01385 ATGCGAACCACTTCATCTCTCTATCGACACACAATGCAACGCAAGATAACGCTTTCAAGCACCTACGCCAACAGTGTTGCAAGGCTCTCAAATTGTTCACAAATGGCTTATTCAGCCGAACCCTCATCTTCTTTGAGCTTTACATCATCTTCCCATTTATCAAATGGCTCAGTTAGTCACAACATATGCTCTTCTTATGGCTCCGACCCTGGACCTAACATTGAGGTTATCAGTTTGAGTAGGCTTAGCTCCAACTTGGAGCAGCTTTTGATCGAATCTGACTCTGATTATAGTGATGCTGACATCATTGTGGAAGGAATTCCGGTTAGTGTTCATCGATGTATTCTGGCATCCAGAAGTAAGTTTTTCCATGAATTATTTAAGAGAGAGAAGGCATCATCAGAAAAAGAAGCGAAATTGAAGTACAACATGAGTGATTTGTTGCCTTATGGCAAGGTTGGATATGAAGCCTTCCTGATATTCCTGGGCTATGTATATACTGGTAAACTCAAGCCCTCTCCAATGGAGGTGTCTAGATGTGTTGACAATGTATGTAACCATGATGCTTGTAGACCTGCAATTAACTTTGCTGTGGAGTTGATGTATGCCTCTTCCATTTTTCAAATACCAGAGTTGGTATCACTTTACCAGCGACGATTGCTGAACTTTATTGGAAAGGCTCATGTGGAAGATGTCATTCCAATCCTCATTGTTGCTTTCCATTGTCAATCAAGTCAACTTGTCACTCAATGTATTGATAGGGTGGCCAGATCAGACCTTGACCAGATTTCAATTGACAAAGAGCTTCCCCCTGAACTCTCAGGAAAAGTTAAATTGCTCCGCCACAACCCTCAGCAAGATGTTGAAAACGATGACTCTGTACTGGATGCTTTGTCTCTAAAACGAATCACTAGAATACACAAGGCATTGGACTCAGATGATGTTGAGCTTGTTAAACTTCTTTTAAATGAGTCAGACGTTACTTTAGATGAAGCCCATGCTCTCCATTATGCTGCAGCCTACTGTGACCCCAAGGTTGTTTCTGAGGTACTGGGTTTGGGACTGGCTAATGTTAATCTTCGGAATTCTCGGGGTTACTCAGTGCTTCACATTGCTGCCATGCGTAAAGAACCTTCCATAATAGTATCCCTACTTACGAAAGGGGCTTGTGCATCAGATTTGACTTTTGATGGTCAGAGTGCCGTTAGTATTTGTAGAAGGTTGACAAGGCCAAAGGACTATCAAGCAAAAACAGAACAGGGGAAAGAAACAAACAAAGATCGGATATGCATTGATGTTCTTGAAAGAGAAATGAGGAGGAATCCACTGGCTGGGGATGCCTGTATGTCTTCCTATACTATGGCTGATGATCTCCACATGAAACTACTATACCTTGAGAACAGAGTGGCATTTGCAAGACTTTTCTTCCCTTCAGAAGCCAAACTAGCCATGGACATTGCGCATGCTGAGACAACATCTGAGTTTGCCGGTCTCTCTGCATCAAACTCAAAAGTTTCAAATGGAAACTTGAGAGAGGTAGATCTCAATGAGACTCCCACAGTGCAAAATAAAAGACTTCTTTCTAGAATGGAAGCTCTTATGAAAACAGTGGAAATGGGGCGGCGCTACTTCCCTCATTGCTCGGAAGTGCTGGACAGGTTCATGGAGGATGACCTGCCTGACTTGTTTTACCTTGAAAAGGGTACTCAAGAAGAGCAGAGAATCAAAAGAACGCGATTCATGGAACTCAAAGATGATGTGCACAAGGCCTTCAGCAAGGACAAGGCCGAATTTAGCCGCTCCGGCATTTCATCTTCCTCCTCTTCATCCTCCCTCAAAGACTCTGTTGTACATTACAAGGCTAGGAAAGTGTAA 1875 0.4288 MRTTSSLYRHTMQRKITLSSTYANSVARLSNCSQMAYSAEPSSSLSFTSSSHLSNGSVSHNICSSYGSDPGPNIEVISLSRLSSNLEQLLIESDSDYSDADIIVEGIPVSVHRCILASRSKFFHELFKREKASSEKEAKLKYNMSDLLPYGKVGYEAFLIFLGYVYTGKLKPSPMEVSRCVDNVCNHDACRPAINFAVELMYASSIFQIPELVSLYQRRLLNFIGKAHVEDVIPILIVAFHCQSSQLVTQCIDRVARSDLDQISIDKELPPELSGKVKLLRHNPQQDVENDDSVLDALSLKRITRIHKALDSDDVELVKLLLNESDVTLDEAHALHYAAAYCDPKVVSEVLGLGLANVNLRNSRGYSVLHIAAMRKEPSIIVSLLTKGACASDLTFDGQSAVSICRRLTRPKDYQAKTEQGKETNKDRICIDVLEREMRRNPLAGDACMSSYTMADDLHMKLLYLENRVAFARLFFPSEAKLAMDIAHAETTSEFAGLSASNSKVSNGNLREVDLNETPTVQNKRLLSRMEALMKTVEMGRRYFPHCSEVLDRFMEDDLPDLFYLEKGTQEEQRIKRTRFMELKDDVHKAFSKDKAEFSRSGISSSSSSSSLKDSVVHYKARKV 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01385 624 Pfam Ankyrin repeats (3 copies) 307 389 IPR002110 GO:0005515
Spst6g01385 624 SMART BTB_4 98 224 IPR000210 GO:0005515
Spst6g01385 624 PANTHER REGULATORY PROTEIN NPR3 44 616 IPR044292 GO:0009862|GO:2000022|GO:2000031
Spst6g01385 624 Gene3D - 298 438 IPR036770 -
Spst6g01385 624 SUPERFAMILY Ankyrin repeat 296 407 IPR036770 -
Spst6g01385 624 ProSiteProfiles BTB domain profile. 98 174 IPR000210 GO:0005515
Spst6g01385 624 Pfam NPR1/NIM1 like defence protein C terminal 406 610 IPR021094 -
Spst6g01385 624 SMART ANK_2a 301 329 IPR002110 GO:0005515
Spst6g01385 624 SMART ANK_2a 364 396 IPR002110 GO:0005515
Spst6g01385 624 SMART ANK_2a 330 360 IPR002110 GO:0005515
Spst6g01385 624 FunFam regulatory protein NPR3-like 298 438 - -
Spst6g01385 624 MobiDBLite consensus disorder prediction 592 624 - -
Spst6g01385 624 Pfam BTB/POZ domain 95 217 IPR000210 GO:0005515
Spst6g01385 624 FunFam Regulatory protein NPR3 72 256 - -
Spst6g01385 624 CDD BTB_POZ_NPR_plant 81 224 - -
Spst6g01385 624 Gene3D Potassium Channel Kv1.1; Chain A 73 256 IPR011333 -
Spst6g01385 624 SUPERFAMILY POZ domain 84 223 IPR011333 -
Spst6g01385 624 MobiDBLite consensus disorder prediction 598 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01385 Spst-Chr6 12772015 12776832 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Spst6g01385 NPR1_like_C 1.9e-97 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01385 K14508 - gmx:100217338 1038.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01385 6 12772015 12776832 Spst6g01385 6 12772015 12776832 ECH