Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01381 ATGGAAACTGGTGGTGGCGGTGGCGGTGGCGGCGATGACCAAGGGAAACCAAGCGGTTACACCGGAAGAGGAATTCCGCCACTGCCTGAGGAACCAAATCTGCGCCCAGAATGGCGACGACCAAGTGGAACCCAGTCGGACCTGAGTCTGCAACCTGAATGGCGGCGTCGGAGGCCAAGCGCTCCTCCTTCCAAACCTTCCAACACTGGCGGCGAGGAGGAAATTCCTCTCCAACCAGAATGGAGGCGCTCGAAGCCAAGTGCAAGTGCGAGTGCGAGTGCTGGTGTTTGGGAACCTGAATGGAGACGATCGAAGCCAAGTGCAAGTGCGAGTGCGAGTGCTGGTGTTTGGGAACCTGAATGGAGACGATCGAAAACTTGTTCAACGGCATTTCCGTGGAACCAAAATTACGGTGTTCGCAAACCTAGCGCGTCGAGTTCCGGTGGCGTTGAAAGACGCGGTGACCCTAACGACCTTTGGCGAGCTGCTCCGGCTGCAGATTCTGTTGTTCCCAAGCTGGAAAAACTACAAATATCAAAACATATACCTGCATCAACTTGTCCACTTGACAAAAAGGATAAAATATCACCTATTCAGAGACCTGATAATGGTGGCTCGTTAGCAATTCTAACTAGTAGACTCCGTGTGAATCATTTTCCTGTTAAGTTTGATCCAGAGCGTACAATAATGCATTATAGTGTTAGTGTCAAGCCTAAGGTTTCTTCAAAATTTGGCCAGCCTCAGAAATTATCAAAGTCTGATCTCTCCATGATCAGAGAGAAACTATTTTCTGATGATCCTGAGATATTGCCCTTGGAGATGACTGCACACGACGGGGCAAAAAATATTTATAGTGCAATACAGTTACCAGAAGAGACCTTTACTGTGGAGATCAATAATGGAGAGGATGAAAAGATAATTTCATATAGTGTTACTTTAGCTCTTGTTAATAGACTCAAGCTTTGTAGGTTAATGGACTATCTCAGCGGGCATAACCTCGCCATTCCTAGGGATATTTTACAAGGCATGGACGTTGTGGTGAAAGAGAATCCAGCTAGACGCACTGTTTCTGTAGGAGGGCGCTACTATCCCACAAATCCTCCTGTAGTAATGAAGGATCTTCACCATGGAATAATTGCTGTTGGGGGTTTTCAGCATAGTTTAAAGCCTACATCTCAGGGTCTGTCCTTATGTGTAGACTACTCAGTTTTGGCTTTTCGAAAGGGAATGTCAATCTTGGATTTCTTGCATGAGTGTATTGATAACTTTAAATTGGATGAATTCGAAAAATTTAGGAAATGCGTTGAGGATGCACTTATTGGATTAAAAGTTAACGTGACCCATCGGAAATGCAATCGGAAATACGTTATTTCAAGATTAACTCCTATGATTACAAGATATGTCACTTTTCCCATTGACAATGCTGGTGGATGGAGTCGCTCAAAGGATATTAGTCTTCTTACCTTTTTTAAAGACAAATATGGGAAGGACATTATGTACAAAGATATTCCTTGTCTAGATTTAGGGAAAGCCAAGAAGAACTATGTACCCATGGAATTCTGTGTTTTAGTTGAGGGCCAAAGATATCCCAAAGAGCGTCTGAATAGTATTTCTGCAAATACATTGAAAGCAATGTCACTAGCTCACCCAAATGAAAGGGAGTGTGCTATACATAAGATGGTGCAGTCTAGTGATGGACCTTGCAGCGGTGGTTTTATTCAAAATTTTGGGATGAGTGTCAACACAACTATGACAACTATTGTGGGACGTGTACTTGGTCCTCCAGAATTGAAGCTAGGGGATCCAAATGGAAAGATCATCAAATTAACAGTGGATCTGGAGAAATGTCACTGGAATCTTGCTGGAAGATCAATGGTGGAAGGTAAACCAGTTGAGCATTGGTGCATTCTTGATTTCACTAGTTTTGGGCCATTTAAGTACAAATTAAGAGGAAAAGATTTCATTCAAAAGCTTACTGGCAAATATAAGAAATTGGGTATACACATGCAGGAGCCCATTTGGTATGAAGAATCTTCGATGAAGATACTTGCAAGTTATGATTTGCTATCTGAATTACTTGAAAAAATTAACAACATTTGTAAATATAACCAAGCACAGCTACAATTTCTTCTGTGTGTAATGGCTAAAAAAAGTCCTGGTTATAAGTACCTCAAATGGATTTCTGAGACCAAACTTGGGATAGTAACACAATGCTGCTTGTCTAATGGTGCTAATGAAGCAGAGGACAAATTTTATACTAATCTGGCTCTCAAGATCAATGCCAAGCTTGGAGGCAGTAACGTGGAGCTCAGTAATGGGCTCCCTTACTTTGTTGGTGAAGGACACGTTATGTTTTTAGGGGCTGATGTCAACCATCCTGGTTATCAAGATACCAGGAGTCCATCAATTGCTGCTGTGGTTGCTACTGTTAACTGGCCTGCTGCAAATCGTTATGCAGCACGTGTATGCCCACAATACAATCGAAGTGAGAAAATATTGAACTTTGGTGAAGTTTGCCTTGAGCTTGTTTCATGCTATAGGAGGATGAATGGAGTTAGGCCCGAAAGAATTGTTATTTTTCGTGATGGGGTGAGTGAGTACCAGTTTGACATGGTTCTTAATGAAGAACTACTAGATTTGAAGAGAGTTTTCCAAAGAGAAAACTACTTCCCCACAATCACTCTAATTGTAGCACAAAAACGACATCAAACTCGATTTTTTCCAGAGGGCTGGAGAGATGGATCTTCCAGTGGCAATATTTTACCAGGAACAGTTGTGGACACAAAAGTTATACACCCTTTTGAGTTTGACTTTTACCTTTGTAGTTACTATGGAAATCTAGGTACAAGCAAACCTACTCATTACCATGTTTTATGGGACGAGCACAGGTTTACATCTGATGAATTGCAAAAGCTCATATACGAGATGTGCTTCACCTTTGCCAAGTGCACTAAACCTGTATCTTTAGTCCCTCCTGTGTATTATGCTGACCTTGCTGCTTATAGAGGACGATTATACCATGAAGCAAGGATTGGGATGCAATCTCCAAAGTCAACAACATCTTCATCTTCCAAAGATGCTTCGTCAATTTCACGGACCACTTCATTTGAACAGGGATTTTACAAGCTGCATACTGACCTGGAAAACATAATGTTCTTCATCTAA 3165 0.4205 METGGGGGGGGDDQGKPSGYTGRGIPPLPEEPNLRPEWRRPSGTQSDLSLQPEWRRRRPSAPPSKPSNTGGEEEIPLQPEWRRSKPSASASASAGVWEPEWRRSKPSASASASAGVWEPEWRRSKTCSTAFPWNQNYGVRKPSASSSGGVERRGDPNDLWRAAPAADSVVPKLEKLQISKHIPASTCPLDKKDKISPIQRPDNGGSLAILTSRLRVNHFPVKFDPERTIMHYSVSVKPKVSSKFGQPQKLSKSDLSMIREKLFSDDPEILPLEMTAHDGAKNIYSAIQLPEETFTVEINNGEDEKIISYSVTLALVNRLKLCRLMDYLSGHNLAIPRDILQGMDVVVKENPARRTVSVGGRYYPTNPPVVMKDLHHGIIAVGGFQHSLKPTSQGLSLCVDYSVLAFRKGMSILDFLHECIDNFKLDEFEKFRKCVEDALIGLKVNVTHRKCNRKYVISRLTPMITRYVTFPIDNAGGWSRSKDISLLTFFKDKYGKDIMYKDIPCLDLGKAKKNYVPMEFCVLVEGQRYPKERLNSISANTLKAMSLAHPNERECAIHKMVQSSDGPCSGGFIQNFGMSVNTTMTTIVGRVLGPPELKLGDPNGKIIKLTVDLEKCHWNLAGRSMVEGKPVEHWCILDFTSFGPFKYKLRGKDFIQKLTGKYKKLGIHMQEPIWYEESSMKILASYDLLSELLEKINNICKYNQAQLQFLLCVMAKKSPGYKYLKWISETKLGIVTQCCLSNGANEAEDKFYTNLALKINAKLGGSNVELSNGLPYFVGEGHVMFLGADVNHPGYQDTRSPSIAAVVATVNWPAANRYAARVCPQYNRSEKILNFGEVCLELVSCYRRMNGVRPERIVIFRDGVSEYQFDMVLNEELLDLKRVFQRENYFPTITLIVAQKRHQTRFFPEGWRDGSSSGNILPGTVVDTKVIHPFEFDFYLCSYYGNLGTSKPTHYHVLWDEHRFTSDELQKLIYEMCFTFAKCTKPVSLVPPVYYADLAAYRGRLYHEARIGMQSPKSTTSSSSKDASSISRTTSFEQGFYKLHTDLENIMFFI 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01381 1054 SMART PAZ_2_a_3 410 547 IPR003100 GO:0005515
Spst6g01381 1054 CDD PAZ_argonaute_like 410 524 - -
Spst6g01381 1054 Gene3D - 591 771 - -
Spst6g01381 1054 ProSiteProfiles Piwi domain profile. 709 1008 IPR003165 GO:0003676
Spst6g01381 1054 Pfam N-terminal domain of argonaute 213 347 IPR032474 -
Spst6g01381 1054 SUPERFAMILY PAZ domain 405 563 IPR036085 GO:0005515
Spst6g01381 1054 SMART DUF1785_2 356 409 IPR014811 -
Spst6g01381 1054 SMART Piwi_a_2 709 1007 IPR003165 GO:0003676
Spst6g01381 1054 Pfam Argonaute linker 1 domain 360 408 IPR014811 -
Spst6g01381 1054 CDD Piwi_ago-like 572 1006 IPR045246 -
Spst6g01381 1054 Pfam Piwi domain 710 1004 IPR003165 GO:0003676
Spst6g01381 1054 MobiDBLite consensus disorder prediction 1 117 - -
Spst6g01381 1054 Gene3D - 776 1054 IPR036397 GO:0003676
Spst6g01381 1054 SUPERFAMILY Ribonuclease H-like 701 1008 IPR012337 -
Spst6g01381 1054 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 213 1009 - -
Spst6g01381 1054 Pfam PAZ domain 414 540 IPR003100 GO:0005515
Spst6g01381 1054 Gene3D paz domain 404 529 - -
Spst6g01381 1054 ProSiteProfiles PAZ domain profile. 410 525 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01381 Spst-Chr6 12723270 12728158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01381 214 1032 Eukaryotic Initiation Factors Gene Family AT1G48410 35.607 1.05e-145 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01381 K11593 - gmx:100783571 1771.52