Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01364 ATGATCACAATACAACAGTCATCCTTGCGACGAGGTTGTGTGCCGCGCCAACGGTTTCATCGGTTCGTGGCTGGTTCGAACCATTTGGAGAACCCAAACCCCAGCTACACCATCCACGCCACCGTCTTCCCCGGCTCCAACGCCTCCCATCTTTTCACCCTTGTCGACGGCTGCTCCAGCGTCTTCCACGTGGCATCCCCCTGCATGCTCGAGGACCCCGCGGACCCTCACAGGGAGCTTTTAGAACCCGCGGTGCAGGGCACGCTGAACGTGCTCGAAGCCGCGAGGCGCGTGGGTCTGCGGCGCGTGGTGCTCACTTCATCGATCTCCGCGTTGGTGCCGAATCCGGGGTGGCCGGTGGGAAGGGCATTGGACGAGGCGTCGTGGAGTTCTGTAGGGGGAGGGGGAAATGGTACCCAGTGGCGGAGAGGGCGGCGTGGGGGTTCGAGGGCGGGGTTGAGGTGGTGGCGGTTCTGCCCTCGACGTGTCTGGGGCCTCTGCTGCAGCCGGAGCTGA 516 0.6415 MITIQQSSLRRGCVPRQRFHRFVAGSNHLENPNPSYTIHATVFPGSNASHLFTLVDGCSSVFHVASPCMLEDPADPHRELLEPAVQGTLNVLEAARRVGLRRVVLTSSISALVPNPGWPVGRALDEASWSSVGGGGNGTQWRRGRRGGSRAGLRWWRFCPRRVWGLCCSRS 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01364 171 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 49 115 IPR002225 GO:0003854|GO:0006694|GO:0016616
Spst6g01364 171 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 54 132 - -
Spst6g01364 171 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 46 132 IPR036291 -
Spst6g01364 171 Gene3D - 28 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01364 Spst-Chr6 12548386 12550461 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01364 36 141 Monolignol Biosynthesis Gene Families AT2G02400 49.231 8.12e-37 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01364 - - vra:106775739 159.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01364 6 12548386 12550461 Spst6g01364 6 12548386 12550461 ECH