Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01344 ATGTCTCAATACCATGGTGATGAAATGGAGTATGCGGCAGATGATAATGAAATGGCGGAGGTAGAAGATGATATGTATTTTCGTGGCAGAGCATTTGGTGAATCAGATTCGGATGATGATGAGGACTACGAATATGACCCTTTGGAAAACCGAATAACAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGATATCCAAGGTATACCTTGGGATAGGTTGAGCATTAGTCGTGAGAAATATAGACAAACTAGACTAGAGCAGTACAAGAATTATGAAAATATACCCCAATCAGGGGAAATGTCAGAGAAGGAATGCAAAGCAACAGATAAAGGGGGAAATTATTATGATTTCTGGCAAAACACTAGATCTGTGAAGTCAACAATACTTCATTTCCAATTGAGGAATTTGGTTTGGTCAACATCAAAACATGATGTATATCTTGTTTCAAATTACTCAATTGTGCACTGGTCTTCATTAAGTTCTAAGAGGTCTGAAGTCTTGAATGTATCAGGGCATGTAGCTCCCTGTGAGAAACATCCTGGAAGCCTCTTGGAAGGTTTTACACAGACACAAATTAGTACCCTGGCAGTACGTGATAACTTGTTGATTGCTGGAGGGTTTCAAGGGGAACTTATTTGCAAGTACTTAGACCGGCCTGGGGTTAGTTTTTGTACCCGAACTACCTATGAGGACAATGCAATTACAAATGCTGTGGAGATTTATGAGCACCCAAGTGGAGCTGTTCATTTCATGGCTTCAAACAATGATTCTGGTGTTAGAGACTTTGATATGGAGAGGTTTCAGCTTTCAAAGCATTTCTCCTTTCCTTGGCCAGTAAATCATACTTCATTAAGCCCTGAAGGGAAACTACTTGTAATTGTTGGTGACAACCCAGAAGGGTTACTGGTGGATTCTCAAACAGGAAAGACTATCACACCTTTACATGGACATTTGGATTTCTCATTTGCATCTGCATGGCATCCTAATGGGCACATATTTGCTACTGGAAACCAAGACAAAACATGTCGTGTTTGGGATGTTCGGAACTTGTCAAAATCTGTTGCTGTTCTTAAAGGCAACCTTGGAGCTATTCGTTCAATACGATTCACGTCTGATGGACAGTTCATGGCGATGGCAGAGCCAGCTGACTTTGTGCATGTCTATGACGCAAAGCATGGGTTTGAAAAGGAGCAGGAGATTGATTTTTTTGGGGAGATCTCTGGTGTATCCTTTAGCCCTGATACAGAATCACTCTTCATAGGTGTTTGGGACCGAACCTATGGAAGCCTTCTACAGCTCAATCGACGCAGAAATTACATGTATCTCGACTGCTTGTAA 1341 0.4161 MSQYHGDEMEYAADDNEMAEVEDDMYFRGRAFGESDSDDDEDYEYDPLENRITDTTAAEARRGKDIQGIPWDRLSISREKYRQTRLEQYKNYENIPQSGEMSEKECKATDKGGNYYDFWQNTRSVKSTILHFQLRNLVWSTSKHDVYLVSNYSIVHWSSLSSKRSEVLNVSGHVAPCEKHPGSLLEGFTQTQISTLAVRDNLLIAGGFQGELICKYLDRPGVSFCTRTTYEDNAITNAVEIYEHPSGAVHFMASNNDSGVRDFDMERFQLSKHFSFPWPVNHTSLSPEGKLLVIVGDNPEGLLVDSQTGKTITPLHGHLDFSFASAWHPNGHIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGQFMAMAEPADFVHVYDAKHGFEKEQEIDFFGEISGVSFSPDTESLFIGVWDRTYGSLLQLNRRRNYMYLDCL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01344 446 SMART WD40_4 351 390 IPR001680 GO:0005515
Spst6g01344 446 SMART WD40_4 308 347 IPR001680 GO:0005515
Spst6g01344 446 FunFam WD-40 repeat family protein 228 444 - -
Spst6g01344 446 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 189 427 IPR011047 -
Spst6g01344 446 Pfam WD domain, G-beta repeat 310 347 IPR001680 GO:0005515
Spst6g01344 446 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 7 445 - -
Spst6g01344 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 356 IPR001680 GO:0005515
Spst6g01344 446 Gene3D - 225 441 IPR015943 GO:0005515
Spst6g01344 446 MobiDBLite consensus disorder prediction 1 45 - -
Spst6g01344 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01344 Spst-Chr6 12365181 12369225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01344 303 427 Miscellaneous Gene Families AT5G08390 28.000 3.96e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01344 - - gmx:100788712 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01344 6 12365181 12369225 Spst6g01344 6 12365181 12369225 ECH