Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01341 ATGAATGAGCAGCGAGTTTCTCAACAACTCCACCAGACCACATCCATCCTTCTAATTGGCTCCAACTGGAATTCCGTTTACAACAATGACATCATCCTACTTTTCGATACATGGAAACAGTGTGCCTTTTCCACGAGGCTCAAGTTTTTTCCTTGGAACACACCTGAAGAAGGAAATCAAGAGGTTTTGTTGGATGTTGGGGAGTTGCTTTTATCTTGTGGAACCCGTGGATTTATGTGTCTGTCTGCCTTGATGACTGATTCTTCCATCATTTTTTCACAAGCCTCTTCAATAAGCAGGCAAGTTGACAATAATGTTCCTAGTGCAAGTTTAGTTGGAGGTAATTCATTAGTTCATGGTGAGCACATAGATTGTGGTGGCAGTGCAATGGATCCTGGCAATGGAGGAAACAATCTTGGCAACAACTCCAATCTCACCTCAAAACAACGTTTACGGTGGACACATGAATTGCACGAGCGCTTTGTTGATGCTGTGGCTCAACTTGGTGGGCCAGATCGTGCCACACCAAAAGGTGTCCTCAGAGTTATGGGTGTACAAGGCTTGACCATTTACCATGTCAAAAGCCATTTACAGAAATACCGACTAGCAAAATATTTACCTGATTCCTCCTCTGATGAAGGGAAAAAGGCTGACAAGAAAGAAACAGGGGATGTGTTGTCCAATCTCGATGGTTCATCTGGGATGCAGATTACTGAAGCACTAAAGCTTCAAATGGAGGTGCAGAAACGACTACATGAACAATTGGAGGTTCAGAGACAGCTACAGTTACGGATAGAAGCCCAGGGTAAATACCTGAAAAAGATAATTGAAGAACAACAGCGGCTCAGTGGCGTTCTTTCAGAGGCACCTGACACTGGCGTTGTGGCTGTGGTTCCAGGCGAGGTGTGCCAAGAACCTGATAATAAGACTGACCCGTCTACCCCGGACCCTGAAAAGGCTGCCAAAGACCGTGTCCCAGCAAAGAGTCTTTCAATTGAATCTTTTTCTTCACGCCATGAACCATTGACACCAGATTCTGGTTGCCATGTTGGTTCGCCTGCTGACAGTCCTAAAGGGGAGAGATCAACCAAGAAGCAAAGACTAAGCATGGATGGATCGTATTCTAAACCAGACATGGTGCTTCCACTTCAAATACTGGAGTCAAGCATGTCATCATACCAGCCACCAAACAGTGTTTTTCTTGGCCAAGAGCAATTTGATCCTTCATTGGGTATGCCTAGCAGAAGTGGTGAGGACTTGGATAAAGTTGGTGGCAGTAATCTATGA 1287 0.4499 MNEQRVSQQLHQTTSILLIGSNWNSVYNNDIILLFDTWKQCAFSTRLKFFPWNTPEEGNQEVLLDVGELLLSCGTRGFMCLSALMTDSSIIFSQASSISRQVDNNVPSASLVGGNSLVHGEHIDCGGSAMDPGNGGNNLGNNSNLTSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDEGKKADKKETGDVLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSEAPDTGVVAVVPGEVCQEPDNKTDPSTPDPEKAAKDRVPAKSLSIESFSSRHEPLTPDSGCHVGSPADSPKGERSTKKQRLSMDGSYSKPDMVLPLQILESSMSSYQPPNSVFLGQEQFDPSLGMPSRSGEDLDKVGGSNL 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01341 428 FunFam Myb family transcription factor 147 205 - -
Spst6g01341 428 Gene3D - 147 206 - -
Spst6g01341 428 MobiDBLite consensus disorder prediction 207 231 - -
Spst6g01341 428 Pfam MYB-CC type transfactor, LHEQLE motif 235 281 IPR025756 -
Spst6g01341 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 147 205 IPR017930 -
Spst6g01341 428 NCBIfam myb-like DNA-binding domain, SHAQKYF class 148 203 IPR006447 GO:0003677
Spst6g01341 428 Coils Coil 238 258 - -
Spst6g01341 428 MobiDBLite consensus disorder prediction 207 225 - -
Spst6g01341 428 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 146 416 IPR044848 GO:0003700
Spst6g01341 428 MobiDBLite consensus disorder prediction 391 428 - -
Spst6g01341 428 MobiDBLite consensus disorder prediction 311 326 - -
Spst6g01341 428 Pfam Myb-like DNA-binding domain 151 201 IPR001005 -
Spst6g01341 428 MobiDBLite consensus disorder prediction 300 377 - -
Spst6g01341 428 SUPERFAMILY Homeodomain-like 146 202 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01341 Spst-Chr6 12341549 12347603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01341 183 428 G2-like Transcription Factor Family AT2G01060 62.257 3.28e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst6g01341 Myb_DNA-binding 3.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01341 - - gmx:100786925 560.451