Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01319 ATGGACTCGAAACCTAGTTCTAGATCTATCCCAAAACACCATCAGAAGACGGCTGGAATTCAAACCCTTGAGGCAAAAGACATCGGGTCTTCAGGGAATTCAGCCTCCCTGAAGACAGGGAAAACTGAGCCGGCAGCTCCGGAAGATTTATCAAAATCTGTCGGGAACGTGTCCAAGCAGAATACTGTGGAAACTGTAGAAAACAAGAAGTTAGGAGTTTCAATCCAAAAGGGGTCTGCTGATTCCTCGAGCAATAAAACTAGTTCTGGTGCTTCTTCATCTGTTCTTGACAAGCCAGATCGAGTTGTTAATGAGAACATAGGCTCACAGGAAAGCTCTATTGATCAAGACAAAAAGACATCAGAATATGGAAGTGTGAAGAACAGTTCTGTTTCTGCCAAAGTTAGTGATGGGGCTAGCAGTCTTGCAAAAACAAGTGGAAGTGCCAAGATCAGTGATAGAGCTGATTTTGTCGAGAGTGGTAAGAGCAGTATTTACAGAGGAAGCACAAGCAGTGATGTGAGTGATGAGAGTACTTGTAGTAGCTTTAGTAGCAGTATAAATAAACCTCACAAGGCAAATGACTTGAGATGGGAAGCTATTCAAGCAGTGCGAAGTAGAGACGGGGTGTTGGGTTTAGGTCACTTTAGACTACTGAAGAGGCTGGGTTGTGGGGATATAGGCAGTGTTTACCTCTCTGAGTTGAGTGGAACTAAATGTTACTTTGCAATGAAGGTAATGGACAAAGGGTCCCTAGCGAGTCGGAAAAAGCTACTTCGAGCTCAGACAGAACGAGAAATCCTGCAGTCTCTCGACCACCCTTTTCTCCCAACTTTGTACACCCATTTTGAGACCGAGAAATTCTCATGTTTGGTAATGGAATTCTGCCCAGGTGGTGACCTCCATACTCTTCGGCAGAAGCAACCAGGGAAGCATTTTCCTGAGCAGGCAGTAAAATTTTATGTGGCAGAGGTCCTTCTGGCTTTGGAGTACCTCCACATGCTTGGGATTGTCTATCGTGACCTTAAGCCAGAAAATGTCCTTGTCAGGGACGACGGACATATTATGCTCTCAGACTTTGATCTTTCCCTCCGATGTGCTGTCAGTCCGACTCTTGTCAAAACCTCCTCCATGGATTCGGAGCCTTTAAGAAAGAATCCTGTTTACTGTGTCCAACCTGCATGTATTGAGCCACCTTCCTGCATCCAACCATCCTGTGTTGCCCCTACGACATGCTTTTCACCCCGCCTCTTCTCTAGCAAATCAAAGAAAGACAGGAAGCCCAAAACTGAAATTGGCAACCAAGTGAGTCCATTACCCGAGCTGATAGCAGAGCCCACCGATGCTCGGTCCATGTCTTTTGTTGGTACTCATGAATACTTGGCACCTGAGATCATTAAGGGTGAAGGTCATGGGAGTGCAGTTGATTGGTGGACTTTTGGGATCTTTCTGTATGAGCTGTTGTTCGGTAAAACTCCCTTCAAGGGATCTGGTAACCGAGCCACGCTGTTTAACGTTGTGGGTCAACCACTGCGATTTCCAGAAGCACCTGTTGTCAGTTTTGCAGCAAGAGATCTTATAAGGGGGTTGCTTGTGAAGGAACCTCAGCACAGATTGGCATACAAAAGAGGGGCAACTGAGATCAAGCAACACCCCTTTTTTGAAGGTGTGAATTGGGCATTGATCAGATGTGCTACCCCACCTGAGATCCCAAAGGCTGTTGAGTTTGAGAAGATACCCTCCCCAGCCTCATCAGGTGCTGGTGAAAAGGCTGTTAACCATATGTCAATAGCTAATCAGAAAGGTTCTGATAATTATCTGGAGTTTGATTTCTTCTAG 1839 0.4573 MDSKPSSRSIPKHHQKTAGIQTLEAKDIGSSGNSASLKTGKTEPAAPEDLSKSVGNVSKQNTVETVENKKLGVSIQKGSADSSSNKTSSGASSSVLDKPDRVVNENIGSQESSIDQDKKTSEYGSVKNSSVSAKVSDGASSLAKTSGSAKISDRADFVESGKSSIYRGSTSSDVSDESTCSSFSSSINKPHKANDLRWEAIQAVRSRDGVLGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQKQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKTSSMDSEPLRKNPVYCVQPACIEPPSCIQPSCVAPTTCFSPRLFSSKSKKDRKPKTEIGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKAVEFEKIPSPASSGAGEKAVNHMSIANQKGSDNYLEFDFF 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01319 612 MobiDBLite consensus disorder prediction 53 69 - -
Spst6g01319 612 Gene3D Phosphorylase Kinase; domain 1 210 301 - -
Spst6g01319 612 FunFam Serine/threonine-protein kinase AGC1-7 447 572 - -
Spst6g01319 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 337 349 IPR008271 GO:0004672|GO:0006468
Spst6g01319 612 Gene3D Transferase(Phosphotransferase) domain 1 302 571 - -
Spst6g01319 612 MobiDBLite consensus disorder prediction 123 145 - -
Spst6g01319 612 CDD STKc_phototropin_like 215 572 - -
Spst6g01319 612 SUPERFAMILY Protein kinase-like (PK-like) 191 574 IPR011009 -
Spst6g01319 612 ProSiteProfiles Protein kinase domain profile. 216 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g01319 612 MobiDBLite consensus disorder prediction 75 95 - -
Spst6g01319 612 FunFam serine/threonine-protein kinase D6PK-like 300 367 - -
Spst6g01319 612 Pfam Protein kinase domain 217 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g01319 612 Pfam Protein kinase domain 451 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g01319 612 FunFam Serine/threonine-protein kinase D6PK-like 214 299 - -
Spst6g01319 612 SMART serkin_6 216 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g01319 612 MobiDBLite consensus disorder prediction 165 190 - -
Spst6g01319 612 MobiDBLite consensus disorder prediction 1 145 - -
Spst6g01319 612 PANTHER FLIPPASE KINASE 1-RELATED 62 578 - -
Spst6g01319 612 MobiDBLite consensus disorder prediction 24 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01319 Spst-Chr6 12193802 12196590 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01319 40 612 AGC Kinase Gene Family AT5G47750 78.049 0.0 879
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Spst6g01319 Pkinase 1.7e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01319 K08286 - gmx:100798088 1080.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01319 6 12193802 12196590 Spst6g01319 6 12193802 12196590 ECH