Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01318 ATGTCAGATGATGAAGGTGTATCCCTGGAGGTGGAGAACAACTACTATGGTAGAAGCAGCGGCGTGAGTGAGATAGAGGAAGATAACTCCTCACACTTTCACTTCAACGATGATGCTCCTAATCCTATGGTTGCCATTACTGAAGAAGAAAAGGAGGAGGAAGATACTGTCTATGTTGCAGTTGGAAAGAGCCAGAGTAGCATGGATGCCTTGTCATGGACCCTCAACAACTTGGCCACTCCATCTACCATAATCTATCTCATACACGTTTTCCCAGAGATCAAGCTCCTTCCAAATCCATTGGGAGTGGGAATGATTCCAAAGGACCAAGTGAGTCCTGAGCTGGTAGAGAGTTACATGGCCCAAGAAAGAGGCAAGAGAAGGGAGCTCCTAAACAAATTTCTCCAATTATGCTCTGCTTCCAAGGTTAAGGTGGACACCATCTTGATTGAGAGTGATTTGATTGCAAAGGCTATCATCGACCTGATTCCTATTCTTCAAATAAGAAAAGTAGTGATTGGAGCCAGCAAATCCCACACAAGAAAAATGAGATCAAGGAAAGGGAGTGGCATAGCTGATCAGATACTTCAGAATGCTCCAGAAAGTTGCGATGTGAGTATTGTATGCGAAGGAAAGGAAGTAAATGAACAGATAACTCGAGCCATTGCTACTGATACTTCCATGTCCCAGAAAAACAAGCATCAGCAGCAAAATACTTCGGTTTCATGGGAAACGGGGCGTGATTGGTATTTGCATAACGAACCCGATGAAGAGGCCTCTAGCTGCTCTTGGGGTTTCATTGGGTTCAGGAGAAACCAAGTGTTTGATTGCAGCACCAATGAGGTAAACAATGAAGATTCAGAGGAGCTATTTGAGATCAATCTGAAGGAGCCATTGAATACAATATCAGAAGATTACATTCACAATAACAACGACAGAGATGTTGTTCATGTGGCAGTAGATCACGTTGGGGAATCAAGCATGGAAGCCCTTTTATGGACTTTGAAACATGCTGTCACTCCCTCCACCACTGTCTATCTCATACACTTCAAAACTTTGATGATTCCTGATGAAAAGATTGTTGGAAAATTCCCGAGGAGTGTTGTGAATGCGGAGTATGTTAAGTTTCACTTGACTCAAGAGAAAGGCAAGAGAAAATTGCTCCTTCAAGAGTTCATTGATTTGTGCCTTGATTCAAAGGTTAAGGTGGAGGTGATGCTCATAGAGGGTGACAACGTTGCCAAAGCAATAACAGACCTAGTTAGAGATCATGATATAAGAAAATTGATGATTGGAATCACCAAATCTAATTTAAGGAAATCCGTCTCTAGAAGGAGAAATGGCATGGCAGATAAGATCCTCAGAAATGCACCAGAAATGTGTGATGTAAAAATAATATGCGATGGAAAGGAAGTGATAGATCAAATAATAGATTGCATTTCGTCATGTGACAATAGCAGTTTCAGAGCTGCACAGGAAGGGAATGAATCATGTGGTTTTGTTTCTCTTATGCGATTTGTGCCGAATCCTATATGGATATTTAGACCCAGATTTTGA 1557 0.4175 MSDDEGVSLEVENNYYGRSSGVSEIEEDNSSHFHFNDDAPNPMVAITEEEKEEEDTVYVAVGKSQSSMDALSWTLNNLATPSTIIYLIHVFPEIKLLPNPLGVGMIPKDQVSPELVESYMAQERGKRRELLNKFLQLCSASKVKVDTILIESDLIAKAIIDLIPILQIRKVVIGASKSHTRKMRSRKGSGIADQILQNAPESCDVSIVCEGKEVNEQITRAIATDTSMSQKNKHQQQNTSVSWETGRDWYLHNEPDEEASSCSWGFIGFRRNQVFDCSTNEVNNEDSEELFEINLKEPLNTISEDYIHNNNDRDVVHVAVDHVGESSMEALLWTLKHAVTPSTTVYLIHFKTLMIPDEKIVGKFPRSVVNAEYVKFHLTQEKGKRKLLLQEFIDLCLDSKVKVEVMLIEGDNVAKAITDLVRDHDIRKLMIGITKSNLRKSVSRRRNGMADKILRNAPEMCDVKIICDGKEVIDQIIDCISSCDNSSFRAAQEGNESCGFVSLMRFVPNPIWIFRPRF 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01318 518 Pfam Universal stress protein family 316 459 IPR006016 -
Spst6g01318 518 CDD STK_N 56 211 - -
Spst6g01318 518 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 12 238 - -
Spst6g01318 518 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 323 466 - -
Spst6g01318 518 Gene3D HUPs 44 221 IPR014729 -
Spst6g01318 518 Gene3D HUPs 307 463 IPR014729 -
Spst6g01318 518 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 56 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01318 Spst-Chr6 12182198 12192632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01318 56 212 U-box Gene Family AT4G25160 32.278 3.97e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01318 - - gmx:100781056 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03331 3 83136493 83137607 Spst6g01318 6 12182198 12192632 PCT