Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01297 ATGGACCTCTTCGCCGCCGACCACTTCCCCGTCCCCGACCACGTCGCTCCATTTCCCGATTCTGGCGACCTCCTTTTCGCTGCAGACCTTCTCTCTCACCGCCACAACCCCCAGAAGCTCCGGCCCATTCGGTCCCTCCCCTCCGCCCTCAATGCCCACCCTCATCCGCCCGATCCGACTTTATCCGGGTCGGGTCACGCCCCGAGCCACGAATCTGACTCGGCTTTGGATGCTGAGGATGAAGATGAGGATGATGACAATTCATCAGCAAGTACCGAAGGAAATGGCCCTAGAAAAAAGAGGAGAAAGACGGTGAGAAAGCTTGAAGGTTTTGTGAAGGATTTGGTGACAAAGGTGATGGAAAAGCAAGAGCAGATGCACAAACAGTTGGTGGAAATCATAGAAAACAAGGAAAGGGAAAGGATAAAGAGAGAAGAAGCTTGGAAGAATGAGGAGATGGAGAGAATTAGAAAAGATGAAGAGGCTAGAGCCCTAGAAAAGTCTCGCAATTTGGCCCTCATATCCTTCATTCAGAATCTGTTGGGCCACGAAATTCAAATCCTCCAACCAGTAGAAACAAGCAGCAAAAGAGAAGAGGATGAAGTTGAGGTGAATGCTCAAAAAGAATTGAACAGTGATCCTAGTAAGAATAGATGGCCTGATGTTGAAGTACAGTCACTTATCACTGTGAGAATTTCATTGGAGCACAAGTTTCGTTTGACGGGATCAAAAGGGTCAATATGGGAGGAGATATCTGAAGCAATGCATGGGTTGGGCTATAATCGCTCTGCAAAGAAGTGTAAGGAGAAGTGGGAAAACATTAACAAGTACTATAAAAGGACAATAGGGAGTGGCAAGAGAAAGCGTCAAAATAGTAAAACTTGCCCCTACTTTGATGAGTTGGACATTCTGTACAGAAACGGCCTCCTAAGTATTGGAAATGCCTTGAGCAATAACACTGATGCTCCCCAGATTGAAGAAAAGGAGTAG 990 0.4687 MDLFAADHFPVPDHVAPFPDSGDLLFAADLLSHRHNPQKLRPIRSLPSALNAHPHPPDPTLSGSGHAPSHESDSALDAEDEDEDDDNSSASTEGNGPRKKRRKTVRKLEGFVKDLVTKVMEKQEQMHKQLVEIIENKERERIKREEAWKNEEMERIRKDEEARALEKSRNLALISFIQNLLGHEIQILQPVETSSKREEDEVEVNAQKELNSDPSKNRWPDVEVQSLITVRISLEHKFRLTGSKGSIWEEISEAMHGLGYNRSAKKCKEKWENINKYYKRTIGSGKRKRQNSKTCPYFDELDILYRNGLLSIGNALSNNTDAPQIEEKE 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01297 329 FunFam Trihelix transcription factor GT-2 219 280 - -
Spst6g01297 329 MobiDBLite consensus disorder prediction 196 217 - -
Spst6g01297 329 PANTHER FI21293P1 55 317 - -
Spst6g01297 329 Gene3D - 219 280 - -
Spst6g01297 329 MobiDBLite consensus disorder prediction 75 89 - -
Spst6g01297 329 MobiDBLite consensus disorder prediction 47 104 - -
Spst6g01297 329 ProSiteProfiles Myb-like domain profile. 211 275 IPR001005 -
Spst6g01297 329 Coils Coil 120 140 - -
Spst6g01297 329 SMART sant 215 277 IPR001005 -
Spst6g01297 329 Coils Coil 150 170 - -
Spst6g01297 329 Pfam Myb/SANT-like DNA-binding domain 217 302 IPR044822 -
Spst6g01297 329 CDD GT1 217 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01297 Spst-Chr6 11939451 11941339 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01297 99 307 Trihelix Transcription Factor Family AT5G47660 44.889 9.77e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Spst6g01297 Myb_DNA-bind_4 1.2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01297 - - gmx:100815105 529.635