Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01295 ATGGCTGAGTCAGACAACGATTCAGGAGGTCAAGCAGGTAACACAAGTGGAGGCAATGAATTCTCAGGGTGTAGAGAGCAAGACAGGTTCCTTCCCATAGCAAACGTTAGCAGGATCATGAAGAAGGCGTTGCCGACGAACGCCAAGATATCCAAGGAGGCCAAGGAAACCGTGCAAGAGTGTGTGTCTGAGTTCATCAGCTTCATAACAGGTGAAGCATCTGATAAGTGCCAGAAGGAAAAGAGAAAAACTATCAACGGTGATGATCTGCTGTGGGCCATGACCACGCTGGGGTTTGAGGAGTATGTGGAGCCTCTCAAGATTTACCTGCACAAGTATAGGGAGATGGAGGGGGAGAAAACTGCCATGATGGGAAGGCCACAGGGTGGTGCTGATCAGAGGGATGAGGCTTATGGCCATGGCCATGGTCATGGAGGTGTGGGGCCAAACCCTATGATGGTGATGATGGGGCATCAGGGACACGTGTATGGATCTGGGAGCGCTGGATCACCATCTTCTGCCAGAACTAGATAG 534 0.5112 MAESDNDSGGQAGNTSGGNEFSGCREQDRFLPIANVSRIMKKALPTNAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEEYVEPLKIYLHKYREMEGEKTAMMGRPQGGADQRDEAYGHGHGHGGVGPNPMMVMMGHQGHVYGSGSAGSPSSARTR 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01295 177 SUPERFAMILY Histone-fold 27 135 IPR009072 GO:0046982
Spst6g01295 177 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Spst6g01295 177 MobiDBLite consensus disorder prediction 1 22 - -
Spst6g01295 177 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 7 132 IPR027113 GO:0001228|GO:0006355|GO:0016602
Spst6g01295 177 FunFam Nuclear transcription factor Y subunit B-3 19 142 - -
Spst6g01295 177 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Spst6g01295 177 Gene3D Histone, subunit A 19 141 IPR009072 GO:0046982
Spst6g01295 177 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Spst6g01295 177 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Spst6g01295 177 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Spst6g01295 177 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01295 Spst-Chr6 11907883 11908416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01295 1 126 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.540 9.84e-72 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Spst6g01295 CBFD_NFYB_HMF 1.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01295 K08065 - gmx:100778034 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01295 6 11907883 11908416 Spst6g01295 6 11907883 11908416 ECH
Spst3g03319 3 83063466 83063864 Spst6g01295 6 11907883 11908416 PCT