Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01292 ATGGGCAATGTCAATGGGAGAGACGATGTCAACGGTACTCCCTCCGAGACCGAAGGAGAAGAAGAAGAAGACGACGAAGGTTGTGCTGGTGCTGCTGACGGTGTCGCCGATTGCATGTCCGCCAACCCTGGCTATCATGCGCCTTCCGATATGATGGGTCATTCTCCCCCTGCTAGCCCTAGAGCCACCCAATCTCCCTTCATGTTCACCCCACAAGTTCCGGTGGTTCCACTCCATAGACCTGATGAGATGCATACTCCAAGCCCTTCTTGGATGCAGACTACCTCAGGGTATGAGGATATGTACAGTGAACTAGGAATTCCAACGATGATTACTTGGAGTTATGATGGGAAAGAAGTGGCTGTGGAGGGATCATGGGATAATTGGACAACAAGAATGTCCTTGCAGAGATCAGGGAAGGACTTCACAATTATGAAAGTGTTGCCATCTGGTGTATACCAATTTAGATTTATTGTCGATGGACAGTGGAGGCATGCACCTGACTTGCCATGGGCTCAAGATGATGCGGGGAATGCTTACAACATTTTGGACTTGCAGGATTATGTTCCTGAAGACATTGGAAGCATTTCTAGTTTTGAACCTCCCAAGTCACCAGACTCTAGTTATAACAACTTACAACTTAGTTCCGAAGATTATGCAAAGGAGCCACCGTCGGTTCCCCCATATTTGCAAATGACGCTTCTTAATGTTCCATCAACGAATATGGAAATCCAACCTCTTACAGCCAGACCTCAGCATGTAGTTCTCAATCATCTTTACATGCAGAAAGGAAAGGGTAGCCCTTCAGTGGTTGCCCTCGGTACAACTCATCGATTTTTAGCCAAATATGTGACTGTGGTGTTGTACAAGTCTTTGCAGAGGTAA 885 0.4678 MGNVNGRDDVNGTPSETEGEEEEDDEGCAGAADGVADCMSANPGYHAPSDMMGHSPPASPRATQSPFMFTPQVPVVPLHRPDEMHTPSPSWMQTTSGYEDMYSELGIPTMITWSYDGKEVAVEGSWDNWTTRMSLQRSGKDFTIMKVLPSGVYQFRFIVDGQWRHAPDLPWAQDDAGNAYNILDLQDYVPEDIGSISSFEPPKSPDSSYNNLQLSSEDYAKEPPSVPPYLQMTLLNVPSTNMEIQPLTARPQHVVLNHLYMQKGKGSPSVVALGTTHRFLAKYVTVVLYKSLQR 294
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01292 294 CDD E_set_AMPKbeta_like_N 108 184 - -
Spst6g01292 294 Pfam Glycogen recognition site of AMP-activated protein kinase 107 186 IPR032640 -
Spst6g01292 294 MobiDBLite consensus disorder prediction 15 30 - -
Spst6g01292 294 Gene3D - 195 292 - -
Spst6g01292 294 SUPERFAMILY AMPKBI-like 189 291 IPR037256 -
Spst6g01292 294 Gene3D Immunoglobulins 102 189 IPR013783 -
Spst6g01292 294 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 294 IPR043554 -
Spst6g01292 294 SUPERFAMILY E set domains 107 192 IPR014756 -
Spst6g01292 294 SMART AMPKBI_2 202 292 IPR006828 GO:0005515
Spst6g01292 294 MobiDBLite consensus disorder prediction 1 67 - -
Spst6g01292 294 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 220 290 IPR006828 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Spst6g01292 Spst-Chr6 11895990 11898541 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01292 106 187 Protein tyrosine phosphatase (PTP) family AT3G01510 31.818 3.98e-06 46.2
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01292 K07199 - gmx:100777497 545.428
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03317 3 83025293 83028446 Spst6g01292 6 11895990 11898541 PCT