Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst6g01292 | ATGGGCAATGTCAATGGGAGAGACGATGTCAACGGTACTCCCTCCGAGACCGAAGGAGAAGAAGAAGAAGACGACGAAGGTTGTGCTGGTGCTGCTGACGGTGTCGCCGATTGCATGTCCGCCAACCCTGGCTATCATGCGCCTTCCGATATGATGGGTCATTCTCCCCCTGCTAGCCCTAGAGCCACCCAATCTCCCTTCATGTTCACCCCACAAGTTCCGGTGGTTCCACTCCATAGACCTGATGAGATGCATACTCCAAGCCCTTCTTGGATGCAGACTACCTCAGGGTATGAGGATATGTACAGTGAACTAGGAATTCCAACGATGATTACTTGGAGTTATGATGGGAAAGAAGTGGCTGTGGAGGGATCATGGGATAATTGGACAACAAGAATGTCCTTGCAGAGATCAGGGAAGGACTTCACAATTATGAAAGTGTTGCCATCTGGTGTATACCAATTTAGATTTATTGTCGATGGACAGTGGAGGCATGCACCTGACTTGCCATGGGCTCAAGATGATGCGGGGAATGCTTACAACATTTTGGACTTGCAGGATTATGTTCCTGAAGACATTGGAAGCATTTCTAGTTTTGAACCTCCCAAGTCACCAGACTCTAGTTATAACAACTTACAACTTAGTTCCGAAGATTATGCAAAGGAGCCACCGTCGGTTCCCCCATATTTGCAAATGACGCTTCTTAATGTTCCATCAACGAATATGGAAATCCAACCTCTTACAGCCAGACCTCAGCATGTAGTTCTCAATCATCTTTACATGCAGAAAGGAAAGGGTAGCCCTTCAGTGGTTGCCCTCGGTACAACTCATCGATTTTTAGCCAAATATGTGACTGTGGTGTTGTACAAGTCTTTGCAGAGGTAA | 885 | 0.4678 | MGNVNGRDDVNGTPSETEGEEEEDDEGCAGAADGVADCMSANPGYHAPSDMMGHSPPASPRATQSPFMFTPQVPVVPLHRPDEMHTPSPSWMQTTSGYEDMYSELGIPTMITWSYDGKEVAVEGSWDNWTTRMSLQRSGKDFTIMKVLPSGVYQFRFIVDGQWRHAPDLPWAQDDAGNAYNILDLQDYVPEDIGSISSFEPPKSPDSSYNNLQLSSEDYAKEPPSVPPYLQMTLLNVPSTNMEIQPLTARPQHVVLNHLYMQKGKGSPSVVALGTTHRFLAKYVTVVLYKSLQR | 294 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst6g01292 | 294 | CDD | E_set_AMPKbeta_like_N | 108 | 184 | - | - | |
Spst6g01292 | 294 | Pfam | Glycogen recognition site of AMP-activated protein kinase | 107 | 186 | IPR032640 | - | |
Spst6g01292 | 294 | MobiDBLite | consensus disorder prediction | 15 | 30 | - | - | |
Spst6g01292 | 294 | Gene3D | - | 195 | 292 | - | - | |
Spst6g01292 | 294 | SUPERFAMILY | AMPKBI-like | 189 | 291 | IPR037256 | - | |
Spst6g01292 | 294 | Gene3D | Immunoglobulins | 102 | 189 | IPR013783 | - | |
Spst6g01292 | 294 | PANTHER | SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 | 1 | 294 | IPR043554 | - | |
Spst6g01292 | 294 | SUPERFAMILY | E set domains | 107 | 192 | IPR014756 | - | |
Spst6g01292 | 294 | SMART | AMPKBI_2 | 202 | 292 | IPR006828 | GO:0005515 | |
Spst6g01292 | 294 | MobiDBLite | consensus disorder prediction | 1 | 67 | - | - | |
Spst6g01292 | 294 | Pfam | 5'-AMP-activated protein kinase beta subunit, interaction domain | 220 | 290 | IPR006828 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst6g01292 | Spst-Chr6 | 11895990 | 11898541 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst6g01292 | 106 | 187 | Protein tyrosine phosphatase (PTP) family | AT3G01510 | 31.818 | 3.98e-06 | 46.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst6g01292 | K07199 | - | gmx:100777497 | 545.428 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst3g03317 | 3 | 83025293 | 83028446 | Spst6g01292 | 6 | 11895990 | 11898541 | PCT |