Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01280 ATGGGTCGTTCTCGTGGGAATTTTCATCACGCGGATGAGGACCCCAACCAGAGGTCAAGGAGAAAAAAGAGTGCCGCCAGCGGAGAAAATTCAGAATCTGGAGCTGCAGGCCAAGGAGCAGGAGAAGGAAAAAAGGCTCTGTACCACTGCAATTATTGCAATAAAGATATAACAGGAAAAATTCGTATTAAGTGTGCCATGTGCCCAGATTTTGACTTGTGTATAGAGTGTTTCTCTGTTGGAGCGGAGGTGACACCTCATAAAAGCAACCACCCTTACAGGGTGATGGATAATTTGTCTTTCCCTCTTATTTGCCCAGACTGGAATGCAGATGATGAAATCTTGCTTCTAGAGGGAATTGAGATGTATGGCCTAGGAAATTGGACAGAAGTTGCCGAGCATGTTGGAACAAAAAACAAAGAGTCATGCATAGAACATTATAAGAATATATACTTGAGCTCCCCGTTCTTTCCTGTTCCGGACATGTCTCATGTAGTTGGGAAAAACAGAAAAGAACTTCTTGCTATGGCAAAGGGGCAGGCTGAAGACAAGAAAGGAATTTCCATGGGGGATCTTAGTTTAAAGGCAGAATCTCCCTTTTCTCCATCTAGAGCTAAGGTTGAAGATTCTCATAAAGCTGGCTCCGCTAATCGTTTATCTTCAAATCTAAATTCAGAGTCAGATTCGGGTCCATCTGGTAACACACACGCCGCAACTGGTGCTAATCAAAAGGCATCTAATGTGGGAAGGGGAAAAGGTGGTCCAGGAGTCATTAAAATGGAAGACTCTCAAATAGACAGAGATTTTGGAGGAAAGAAGCCAACTTCCTCAGGAAATGAAGGTCCTTCTCTAGTTGAATTGAGTGGGTACAATGCTAAAAGACAGGAATTCGAACCTGAATATGATAATGATGCTGAACAACTACTTGCTGAAATGGAATTTAAGGATACCGACTCAGAGGAAGAGCGAGAGTTGAAATTACGGGTATTACGATTGTATTCAAAGAGGCTTGATGAAAGAAAGCGGAGGAAGGATTTCATACTTGAAAGAAATTTGTTATACCCAAATCCATTTGAGAAGGATTTAACACCTGAGGAGAAGGCAATATGTCGGAAATACGACATATTCATGCGCTTTCATTCTAAGGAAGATCACGAGGAATTGCTTAGAACAATGTTATTTGAGCATAGAAGTTGGAAAAAAATTCAAGACCTCAAGGAAGCCCGGGTAGCTGGTTGCCGCAATTCAGCTGAAGCTGATAGATATCTCTCACACAAGAGAAAGAGGGAAGCCGAAGAAATTGCTCGAAGGACAAGGACAAAAGAAAGTGGTCAGGTTGGTCCGAGCAATCAGGGAATTCCAAATGCATTGACTTCTCCAGATTCAACTAATAAGGATCTGAGTGCAAGACCTGCAGGACCAGCTACTTCTAGTTCTGTCAATGAGATGGATGTAACAGGATACTATGGAGCAGATTTACTTTGTGAAGCTGAGAAACGATTGTGCTGTGAGATAAGATTGCCTCCAGTCACATATCTAAAGATGCAAGAGCAACTGTCTCTTCAAATACTTGCTGGCACTGTCTCTGCAAAATCCGATGCTCATCAGTTGTTCAAGATGGATGCCATGAAGATTGACAGGGTGTATGATATGCTCGTTAAGAAAGGGATCGGTTCACCCTGA 1683 0.4248 MGRSRGNFHHADEDPNQRSRRKKSAASGENSESGAAGQGAGEGKKALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWTEVAEHVGTKNKESCIEHYKNIYLSSPFFPVPDMSHVVGKNRKELLAMAKGQAEDKKGISMGDLSLKAESPFSPSRAKVEDSHKAGSANRLSSNLNSESDSGPSGNTHAATGANQKASNVGRGKGGPGVIKMEDSQIDRDFGGKKPTSSGNEGPSLVELSGYNAKRQEFEPEYDNDAEQLLAEMEFKDTDSEEERELKLRVLRLYSKRLDERKRRKDFILERNLLYPNPFEKDLTPEEKAICRKYDIFMRFHSKEDHEELLRTMLFEHRSWKKIQDLKEARVAGCRNSAEADRYLSHKRKREAEEIARRTRTKESGQVGPSNQGIPNALTSPDSTNKDLSARPAGPATSSSVNEMDVTGYYGADLLCEAEKRLCCEIRLPPVTYLKMQEQLSLQILAGTVSAKSDAHQLFKMDAMKIDRVYDMLVKKGIGSP 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01280 560 CDD SANT 108 150 IPR001005 -
Spst6g01280 560 Pfam Myb-like DNA-binding domain 107 150 IPR001005 -
Spst6g01280 560 Gene3D - 102 153 - -
Spst6g01280 560 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Spst6g01280 560 SMART zz_5 44 89 IPR000433 GO:0008270
Spst6g01280 560 SUPERFAMILY RING/U-box 48 110 - -
Spst6g01280 560 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Spst6g01280 560 MobiDBLite consensus disorder prediction 214 246 - -
Spst6g01280 560 ProSiteProfiles SWIRM domain profile. 474 560 IPR007526 GO:0005515
Spst6g01280 560 MobiDBLite consensus disorder prediction 180 260 - -
Spst6g01280 560 CDD ZZ_ADA2 48 96 IPR041983 -
Spst6g01280 560 SMART sant 104 153 IPR001005 -
Spst6g01280 560 FunFam Transcriptional adapter 2 101 153 - -
Spst6g01280 560 MobiDBLite consensus disorder prediction 1 42 - -
Spst6g01280 560 FunFam Transcriptional adapter 41 96 - -
Spst6g01280 560 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Spst6g01280 560 MobiDBLite consensus disorder prediction 1 27 - -
Spst6g01280 560 MobiDBLite consensus disorder prediction 266 285 - -
Spst6g01280 560 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Spst6g01280 560 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Spst6g01280 560 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 48 555 - -
Spst6g01280 560 MobiDBLite consensus disorder prediction 428 481 - -
Spst6g01280 560 SUPERFAMILY Homeodomain-like 101 154 IPR009057 -
Spst6g01280 560 MobiDBLite consensus disorder prediction 442 481 - -
Spst6g01280 560 Gene3D - 475 558 IPR036388 -
Spst6g01280 560 FunFam Transcriptional adapter 2 475 559 - -
Spst6g01280 560 PIRSF Txn_adaptor_ADA2 35 560 IPR016827 GO:0003713|GO:0006357|GO:0035065
Spst6g01280 560 Pfam Zinc finger, ZZ type 46 88 IPR000433 GO:0008270
Spst6g01280 560 Gene3D - 41 96 IPR043145 -
Spst6g01280 560 SUPERFAMILY Homeodomain-like 468 557 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01280 Spst-Chr6 11799544 11803870 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01280 1 558 EF-hand Containing Proteins AT3G07740 46.875 7.97e-165 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst6g01280 Myb_DNA-binding 6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01280 K11314 - gmx:100811887 987.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01280 6 11799544 11803870 Spst6g01280 6 11799544 11803870 ECH