Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01273 ATGCAAACGTCCCAGAAACACCCAACTTCAGCTGGTATCCATTTATACCACCAGCCTGTGCAAGACATTGATCCCTACACTCGTTACCAAATATTGCAAAGCAATTTGTGCCATGAAATCCATGATAGCAGCAGTCAAGGAACCTCTATTTCTTTTGAACCCTGCAAGGAGCAATACTTTACCCTTGAATCATCCCCAGCAATCAATGATCTCATAGGTTGTGATTCTCCTTCCTATGCTAGTGTATCATCCAATTCCAATAGGAGTCCTTTTTCTCCACAAGCTTCTCATTCATACCATTCAGACCAGCATCAGTCATCTGACAACAATTATGGATCACCAACAAGTGCACACTCTAGTGCTGATGAAAGCTATGAATTGAAGCACAAGCTTAGAGAGCTTGAGATTTCATTGTTGGGGCCTGATTCAGATATTGTTGACAGTTGTCACTGCTGCTACAAGGGTGGCCACCACGGAGCGTCTCCAATGGCTAAATACAATTGGGAGCAGATCGTTGAAATGATTCCAAAACTAGACTTGAAGGAAGTCCTCATTCGGTGTGCACAGGCTGTGGCTGATGATGATATTGAAACAGCGGTGGGATTTATGAATAATGTATTGCCAAAGATGGTCTCAGTTGGGGGTGATCCAATCCGGAGGTTAGGTGCCTACATGTTGGAGGGTCTAAGAGCAAGGTTGGAGTCTTCAGGGAGCCTAATCTACAAAGCTTTGAAATGTGAACAACCGGCAAGCAAAGATCTCATGACTTACATGCACATCCTGTACCAGATTTGTCCATATTGGAAGTTTGCCTACGTATCTTCCAATGCTGTCATTGGAGAAGCAATGCTAAATGAATCAAGAATTCACATAATTGACTTCCAAATTACACAGGGCACTCAGTGGTTCCTGCTTATTCAGGCTCTTGCATCTCGTCCAGGTGGACCACCTTTCATTCGTTTAACTGGTGTCGATGATTCCCAATCTTTTCATGCAAGAGGTGGAGGACTTGACATTGTAGGACATCGCCTCTCAGATTATGCCAAATCTTGTGGAGTGCCGTTTGAGTTCCACAGTGCTGCAATGTCTGGATGCGAGGTTGAACTAAAAAACCTTATAGTTCGACCCGAAGAAACGCTAGCTGTGAATTTCCCGTTTGTTTTGCATCACATGCCAGATGAGAGTGTGAGCACGGAGAACCATAGGGACAGGCTATTAAGACTGGTGAAGAGCTTGTCACCCAAGGTTGTGATCCTTGTTGAGCAAGAATCCAACACCAACACTTCCCCCTTTTTCCAAAGGTTTGTTGAGACCTTGAGTTATTACAGTGCTATGTTTGAGTCAATAGACGTGGCCCTCCCCAGACAGGATAAGCAAAGGATCAGCGCAGAACAACACTGTGTGGCTCGTGACATTGTTAACATGATAGCTTGTGAGGGGCCTGAGAGGGTGGAAAGGCATGAACTTTTGGGGAAGTGGAGGTCAAGATTTTCGATGGCTGGCTTTGCACCATGCCCTTTGAGTTCCTCAGTCACTAATGCAGTTAGAAATATGTTAACTGAATTCAATGAAAATTATAGGCTAGAACATAGAGATGGTGCTCTCTATCTAGGATGGAAGAAAAGACCCTTATGCACATCTTCTGCTTGGAGATGTTACTGA 1662 0.4428 MQTSQKHPTSAGIHLYHQPVQDIDPYTRYQILQSNLCHEIHDSSSQGTSISFEPCKEQYFTLESSPAINDLIGCDSPSYASVSSNSNRSPFSPQASHSYHSDQHQSSDNNYGSPTSAHSSADESYELKHKLRELEISLLGPDSDIVDSCHCCYKGGHHGASPMAKYNWEQIVEMIPKLDLKEVLIRCAQAVADDDIETAVGFMNNVLPKMVSVGGDPIRRLGAYMLEGLRARLESSGSLIYKALKCEQPASKDLMTYMHILYQICPYWKFAYVSSNAVIGEAMLNESRIHIIDFQITQGTQWFLLIQALASRPGGPPFIRLTGVDDSQSFHARGGGLDIVGHRLSDYAKSCGVPFEFHSAAMSGCEVELKNLIVRPEETLAVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVILVEQESNTNTSPFFQRFVETLSYYSAMFESIDVALPRQDKQRISAEQHCVARDIVNMIACEGPERVERHELLGKWRSRFSMAGFAPCPLSSSVTNAVRNMLTEFNENYRLEHRDGALYLGWKKRPLCTSSAWRCY 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01273 553 Pfam GRAS domain family 180 551 IPR005202 -
Spst6g01273 553 MobiDBLite consensus disorder prediction 83 124 - -
Spst6g01273 553 ProSiteProfiles GRAS family profile. 171 551 IPR005202 -
Spst6g01273 553 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 116 545 IPR005202 -
Spst6g01273 553 MobiDBLite consensus disorder prediction 83 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01273 Spst-Chr6 11730757 11732418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01273 1 551 GRAS Transcription Factor Family AT4G17230 58.123 0.0 628
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Spst6g01273 GRAS 5.2e-127 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01273 - - gmx:100819190 991.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01273 6 11730757 11732418 Spst6g01273 6 11730757 11732418 ECH
Spst3g03289 3 82756808 82758457 Spst6g01273 6 11730757 11732418 PCT